PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01191.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 374aa    MW: 40175.8 Da    PI: 6.2872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01191.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.54.3e-26120181159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg +WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp+++++ Y g H+++
  Zmw_sc01191.1.g00140.1.am.mk 120 VDDGRSWRKYGQKEILGAKYPRAYYRCTHRhtqGCAATKQVQRTDEDPELFDVFYVGAHTCR 181
                                   58***************************98999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.345115183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-26117181IPR003657WRKY domain
SuperFamilySSF1182908.37E-24118182IPR003657WRKY domain
SMARTSM007742.2E-36120182IPR003657WRKY domain
PfamPF031065.1E-25121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MESLDSSGGS RLLAVTELSH IKELAKQLEE QLGGSRDLCK HLASQIFSLT ERSIGIITCC  60
SDFGGARKRS ATDAGLAAAT PGSLGQLADA PFKTTKKRKM MEKMKSQVRV SSGGGCETPV  120
DDGRSWRKYG QKEILGAKYP RAYYRCTHRH TQGCAATKQV QRTDEDPELF DVFYVGAHTC  180
RVHNTVADKA ASATPPPDQH DPDAHSLQHN LTVKTEEGLA VAGEPQGWEW DATAPFGMSA  240
TPASLCLAAE SCPFSAPSTS DNRGVLSPAS SELNHAPSFP TFDAGEWWAQ SELQGVVSAL  300
VVAGTPPAPD CMDGTDELLD DFDVSFFLAA RARTQRSTIR RWETGFPTRE VPIAIAPAGR  360
PSVRDADSSG SPHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-23120181869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-112probable WRKY transcription factor 30
TrEMBLA0A2S3GYW51e-110A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131