PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01191.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 535aa    MW: 57539.9 Da    PI: 7.0413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01191.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.2e-27330391159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+r++edp+++++ Y g+H+++
  Zmw_sc01191.1.g00090.1.am.mk 330 VDDGHSWRKYGQKEILGAKYPRAYYRCTHRhsqGCEATKQVQRTDEDPELFDVFYLGTHTCR 391
                                   59***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.482325388IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-26326391IPR003657WRKY domain
SuperFamilySSF1182903.14E-24328392IPR003657WRKY domain
SMARTSM007742.4E-38330392IPR003657WRKY domain
PfamPF031064.6E-26331391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MIASSIGVPR ISPAPSAAPR LALSQEVSKS PRPTREDYSR STALQSSISI RAFDEAGLTP  60
VNSQLIDEMS SLFRSQKGSQ VRQATLPCRS DPFDAIDAVT LASSSKASIS ALAPADAPGW  120
VELTTVHRSS VRGRPRMSPF LQTCNNSAAP GPVGVVVVVT VSPREWECPT RRAAGSVRVH  180
HVRRDLPFVH EPVPELDQLA PPFLVSKQVR SMESLDSSCG SRLPVVTELS NIKELAKQLE  240
EQLGGSRDLC KHLASQIFSL TERSIGIITS SDFGGARKRS AADAGLGAAT LGSLGQLADA  300
PFKTTKKRKI MEKTKSQVRV SSAGGCETPV DDGHSWRKYG QKEILGAKYP RAYYRCTHRH  360
SQGCEATKQV QRTDEDPELF DVFYLGTHTC RFHNTAADEA AAATPPPEHR PDARSLLHNL  420
AVKNREGLAV AGEPQGWDAT TPFGMPSTPA SLCLAPERSP FSAPSVSDNY GVSPAPPELH  480
HAPSFPTFDA AEWRAQSELH EVVSALVVAG TPPVPGCMDV TDELLDDIDV SFFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-23330391869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-110probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ71e-110A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131