PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01184.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 193aa    MW: 20795.8 Da    PI: 8.5962
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01184.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC651.1e-20111155145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     ++epgrCrRtDGKkWRC r +++++k+C+ H+hrgr+r  + ++e
  Zmw_sc01184.1.g00010.1.am.mkhc 111 EPEPGRCRRTDGKKWRCCRSTIPNEKYCQGHMHRGRKRPVQLVVE 155
                                     69************************************9998875 PP

2QLQ45.81.8e-164680337
                             QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                    F a+Qlq+L++Q  +y y+aa++PvP +L+++i+k
  Zmw_sc01184.1.g00010.1.am.mkhc 46 FAAMQLQELEQQSRVYHYMAARVPVPTHLVFPIWK 80
                                    889******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-44480IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.5024580IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-104679IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166720.829111155IPR014977WRC domain
PfamPF088792.5E-18112150IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MCPVALGTQG ISGVLAWFRS VAAAAALQEE MKALIASIPD GAGAVFAAMQ LQELEQQSRV  60
YHYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA TLCLDFGKDP EPEPGRCRRT  120
DGKKWRCCRS TIPNEKYCQG HMHRGRKRPV QLVVEDDEPD SAPGSETTPG KADDKNASNK  180
KLTVAAPTAV KSS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800926.11e-108growth-regulating factor 11-like
SwissprotA5HEG91e-103GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A2S3H2A31e-107A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EVY21e-107A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QSN31e-107A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
TrEMBLA0A3L6T5041e-107A0A3L6T504_PANMI; Growth-regulating factor 11-like
STRINGPavir.Bb02610.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]