PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01181.1.g00350.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 278aa    MW: 29114.2 Da    PI: 9.4826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01181.1.g00350.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20111161155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a+ +++g
  Zmw_sc01181.1.g00350.1.sm.mk 111 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAAVRFKG 161
                                   68********.**********64....55**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-13111160IPR001471AP2/ERF domain
CDDcd000183.10E-19111170No hitNo description
SuperFamilySSF541711.37E-22112170IPR016177DNA-binding domain
SMARTSM003801.2E-35112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32112170IPR001471AP2/ERF domain
PROSITE profilePS5103225.053112169IPR001471AP2/ERF domain
PRINTSPR003673.4E-12113124IPR001471AP2/ERF domain
PRINTSPR003673.4E-12135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDRPRDTAGA SAPRAPSSSS PYDGHGEHSG GGGGGACQPS VPAAEEEHAV MVAALAHVIG  60
LGRRGSGEVA HGVVSSGSAA AVLGEQVTTP AHGAAPPPAT TVAEQQQQPR PRYRGVRQRP  120
WGKWAAEIRD PVKAARVWLG TFDTAEDAAR AYDDAAVRFK GAKAKLNFPH RHHAAALHLQ  180
HRRQPGTAVA STSMPRLPRA APVAPTAAHH PLRLEEFPDL HRYTYLLQSG DVDLQQATSS  240
RAAPAQSSTT MTTSAVARDD QEASGPPSDR PSPWPGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23113171665ATERF1
3gcc_A1e-23113171665ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188611.13e-39ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A287WKC72e-39A0A287WKC7_HORVV; Uncharacterized protein
STRINGMLOC_10878.12e-40(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2564555