PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01180.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 144aa MW: 15146.1 Da PI: 9.6976 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.3 | 1e-23 | 73 | 121 | 2 | 50 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 C vegC+adls+ +eyh rhkvCe+hsk+pvv+v+g++qrfCqqCsr+ Zmw_sc01180.1.g00250.1.sm.mk 73 CSVEGCTADLSKGREYHLRHKVCEAHSKTPVVVVAGQQQRFCQQCSRYA 121 ***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-24 | 65 | 120 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.495 | 70 | 144 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.36E-23 | 71 | 121 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.1E-18 | 73 | 120 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR 60 PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRY 120 ARAHARSLIA ANMHYSWIPF PSTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-16 | 72 | 120 | 5 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178580.1 | 1e-44 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q0JGI1 | 9e-42 | SPL2_ORYSJ; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A3S6H659 | 3e-54 | A0A3S6H659_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | Pavir.Ea03909.1.p | 5e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10456 | 30 | 38 |
Publications ? help Back to Top | |||
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