PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01170.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26362.6 Da    PI: 5.8521
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01170.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-1861114356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++++eq + Le  F+k+r++ + ++ +LA+ lgL+ +qV vWFqNrRa++k
  Zmw_sc01170.1.g00210.1.am.mkhc  61 KKRRLSDEQARLLEMSFRKERKLETPRKVQLAADLGLDAKQVAVWFQNRRARHK 114
                                     56689***********************************************99 PP
2HD-ZIP_I/II111.65.1e-3661152293
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrls+eq++lLE+sF++e+kLe+ rKv+la +Lgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++L
  Zmw_sc01170.1.g00210.1.am.mkhc  61 KKRRLSDEQARLLEMSFRKERKLETPRKVQLAADLGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAVVLRNCHL 139
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelke 93 
                                     ++e+ +L+++l+e
  Zmw_sc01170.1.g00210.1.am.mkhc 140 QTEMLKLEDRLAE 152
                                     ********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.71456116IPR001356Homeobox domain
SMARTSM003891.1E-1559120IPR001356Homeobox domain
SuperFamilySSF466893.19E-1660122IPR009057Homeodomain-like
CDDcd000861.03E-1461116No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1661114IPR009057Homeodomain-like
PfamPF000464.0E-1661114IPR001356Homeobox domain
PRINTSPR000319.7E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000319.7E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGCEGEERML FPSSFAFVPA ESFAEAADTS GSSGEQKKAR QRRRRKPKPA PEDQAGDEQA  60
KKRRLSDEQA RLLEMSFRKE RKLETPRKVQ LAADLGLDAK QVAVWFQNRR ARHKSKLMEE  120
EFAKLRAAHD AVVLRNCHLQ TEMLKLEDRL AEAEEEKKQL IIAAAAAAAA TGAADTSSPS  180
SSSFSTVTCN PAALVGQQFG VEDEVADFSY MSQYAYNDYL MDFAAGYFGG VVYDQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14363RRKPKPAPEDQAGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985327.12e-99homeobox-leucine zipper protein HOX12
SwissprotA2XDK59e-82HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLK4AEE84e-98K4AEE8_SETIT; Uncharacterized protein
STRINGSi037255m7e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101