PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01164.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 477aa    MW: 51594.4 Da    PI: 6.68
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01164.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30252308259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                      Dg+nWrKYGqK+vk+s+++rsYYrCt +gC +kkkve++  d++vvei+Y+g+Hnhe
  Zmw_sc01164.1.g00030.1.sm.mkhc 252 ADGFNWRKYGQKQVKSSDNSRSYYRCTNSGCLAKKKVEHCP-DGRVVEIIYRGTHNHE 308
                                     7****************************************.***************8 PP
2WRKY32.81.3e-10422442222
                                     --SS-EEEEEEE--TT-SS-E CS
                            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                     +Dgy+WrKYGqK vkg+++pr
  Zmw_sc01164.1.g00030.1.sm.mkhc 422 NDGYRWRKYGQKIVKGNPNPR 442
                                     8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26246310IPR003657WRKY domain
PROSITE profilePS5081122.251246310IPR003657WRKY domain
SuperFamilySSF1182901.7E-23248310IPR003657WRKY domain
SMARTSM007742.5E-32251309IPR003657WRKY domain
PfamPF031066.6E-23253308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-9415442IPR003657WRKY domain
PROSITE profilePS5081113.196416442IPR003657WRKY domain
SuperFamilySSF1182902.62E-8416443IPR003657WRKY domain
SMARTSM007740.0019421467IPR003657WRKY domain
PfamPF031062.8E-7422443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAAGDPEPEP AVEKRPSPEE AAAAAEAEET GPPPAEAPRS PAEENPPAPA AVXXXPAEEN  60
PTAPGAAAEV DTRPRPKPPG PPPPGFYAYS EAHVAKNEAK EVKAEDKVEK EKMKEKVEAK  120
VVEVAEVKVE GKEKGVRPAR RPAGSSVEAP ILAVPMVAVP CFIAPPGFPG QFVMSHQTAL  180
ASITAQAQMQ LQSPTSSVNS EAPSSPFYIA QKAIMPHQQA PSGTEGTICT PTADKLSSSE  240
SKLHHNVVNM VADGFNWRKY GQKQVKSSDN SRSYYRCTNS GCLAKKKVEH CPDGRVVEII  300
YRGTHNHEPP QKTRFAKGRV PPIHVPSGGE TLRLVNTEIV DSRTPTYNDQ STVTETSENA  360
SEQQLFCSSD CEGDAGNRSE DEHPSPEPLP KRRTVELSSP NFTPVLRTVR EQKIIVQAGK  420
INDGYRWRKY GQKIVKGNPN PRWVLLLING VITAVLMVDA LYFVYEMRAG IEALGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-122483101477Probable WRKY transcription factor 4
2lex_A2e-122483101477Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.11e-179probable WRKY transcription factor 32
TrEMBLA0A368RK160.0A0A368RK16_SETIT; Uncharacterized protein
STRINGSi013488m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455