PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01160.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 675aa MW: 75406.9 Da PI: 5.273

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01160.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.3	2.7e-48	32	205	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k............................. 49 lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp + Zmw_sc01160.1.g00140.1.am.mkhc 32 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPgNrircafprffsfarfhlnlllvqdsdaaa 110 699**********************9999*************5489*********************** PP NAM 50 ............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgr 112 +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + sk k++++g+kktLvf+kgr Zmw_sc01160.1.g00140.1.am.mkhc 111 clpallnlsyksLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIRSKgdkrKQHVIGMKKTLVFHKGR 189 9999988765666888***********************************988767777********* PP NAM 113 apkgektdWvmheyrl 128 apkge+t W+mheyr Zmw_sc01160.1.g00140.1.am.mkhc 190 APKGERTGWIMHEYRT 205 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-19	20	91	IPR003441	NAC domain
PROSITE profile	PS51005	51.05	32	226	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	33	204	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-35	104	226	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
YPPSAANPPR SGRRRISSSH RATMTVMELK ALPLGFRFHP TDEELVRHYL KGKITGQINS 60 EVEVIPEIDV CKCEPWDLPG NRIRCAFPRF FSFARFHLNL LLVQDSDAAA CLPALLNLSY 120 KSLIRSEDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRVIRSKGD KRKQHVIGMK 180 KTLVFHKGRA PKGERTGWIM HEYRTTEPEF ECGEQGSYVL YRLFCKQEEK NERLTPEEMD 240 RSGYSPTTPR SSPNNIEANE EAFTPLNKES PESTLHDSPT NLPNSVETHD VSLTRWLVDR 300 TDNLAANAVN VSKTPLNGHI DGIAKVDPSV GGVTQLIDSQ QQHNGDPNHF AAGSAPILQH 360 EENGFFNFQQ GMMGFDGNVN APDAIDEFLN QALTDPDEHS STTSKVQYDS DPGIMAPEFG 420 NHGIMQGELP DDQAWWASLN FDLDEPNSLL PYDTTDPDVL SMDSGAESLH DLFNGWSTDP 480 AVQGTGITIM PRQSQLNVQQ NNLFLRQGIA NRRLRLQEYL SPNVESATNV DCEDKASCTV 540 TSDYLDEAAE ESTAEKGEPY DEDDAESTGI TIRSRHPAPS SSATSSFTQQ GTAVRRLRLQ 600 SDLKTDALKV VSEAKSVPRR RRTSEKNDEI TKQEDGFDSL VRAPGKKRGF QSHLFWLVLS 660 VAVLLLLCVG VYGWA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

YPPSAANPPR SGRRRISSSH RATMTVMELK ALPLGFRFHP TDEELVRHYL KGKITGQINS  60
EVEVIPEIDV CKCEPWDLPG NRIRCAFPRF FSFARFHLNL LLVQDSDAAA CLPALLNLSY  120
KSLIRSEDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRVIRSKGD KRKQHVIGMK  180
KTLVFHKGRA PKGERTGWIM HEYRTTEPEF ECGEQGSYVL YRLFCKQEEK NERLTPEEMD  240
RSGYSPTTPR SSPNNIEANE EAFTPLNKES PESTLHDSPT NLPNSVETHD VSLTRWLVDR  300
TDNLAANAVN VSKTPLNGHI DGIAKVDPSV GGVTQLIDSQ QQHNGDPNHF AAGSAPILQH  360
EENGFFNFQQ GMMGFDGNVN APDAIDEFLN QALTDPDEHS STTSKVQYDS DPGIMAPEFG  420
NHGIMQGELP DDQAWWASLN FDLDEPNSLL PYDTTDPDVL SMDSGAESLH DLFNGWSTDP  480
AVQGTGITIM PRQSQLNVQQ NNLFLRQGIA NRRLRLQEYL SPNVESATNV DCEDKASCTV  540
TSDYLDEAAE ESTAEKGEPY DEDDAESTGI TIRSRHPAPS SSATSSFTQQ GTAVRRLRLQ  600
SDLKTDALKV VSEAKSVPRR RRTSEKNDEI TKQEDGFDSL VRAPGKKRGF QSHLFWLVLS  660
VAVLLLLCVG VYGWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	31	227	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	31	227	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	31	227	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	31	227	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-37	31	227	19	169	NAC domain-containing protein 19
3swm_B	1e-37	31	227	19	169	NAC domain-containing protein 19
3swm_C	1e-37	31	227	19	169	NAC domain-containing protein 19
3swm_D	1e-37	31	227	19	169	NAC domain-containing protein 19
3swp_A	1e-37	31	227	19	169	NAC domain-containing protein 19
3swp_B	1e-37	31	227	19	169	NAC domain-containing protein 19
3swp_C	1e-37	31	227	19	169	NAC domain-containing protein 19
3swp_D	1e-37	31	227	19	169	NAC domain-containing protein 19
4dul_A	1e-37	31	227	16	166	NAC domain-containing protein 19
4dul_B	1e-37	31	227	16	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445085.1	0.0	protein NTM1-like 9 isoform X2
Refseq	XP_025820792.1	0.0	protein NTM1-like 9
TrEMBL	A0A0A9CTY0	0.0	A0A0A9CTY0_ARUDO; Uncharacterized protein
STRING	Sb07g003900.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59