PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01160.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25735.4 Da PI: 5.5976 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.6 | 4.4e-27 | 43 | 132 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvltpsdv+k++rlv+pk++ae++ + ++++l +ed+ g W+++++y+++s++yv+tkGW+ Fv+a +L +gD+v Zmw_sc01160.1.g00120.1.am.mk 43 FDKVLTPSDVGKLNRLVVPKQHAERFFPEAGNGTQLCFEDRAGAPWRFRYSYWGSSQSYVMTKGWSLFVRAARLAAGDTVS 123 89************************666678889********************************************** PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F++ ++++ Zmw_sc01160.1.g00120.1.am.mk 124 FSR--GAGGRY 132 *93..345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-36 | 36 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-27 | 40 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-24 | 41 | 134 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 43 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-24 | 43 | 130 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-19 | 43 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRMDLSLGTL VEATREVQEE HQADLGHQDR RQHGDAAERE HMFDKVLTPS DVGKLNRLVV 60 PKQHAERFFP EAGNGTQLCF EDRAGAPWRF RYSYWGSSQS YVMTKGWSLF VRAARLAAGD 120 TVSFSRGAGG RYFIDYRHCQ RRRQEISFGD TAAMPAWPWV QRTSSMTGGE GASATNPVLV 180 DTGPPGTRHH DAEVGPSRAK CFRLFGFNVE CSRDDDAAME DEEDVDDDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-43 | 37 | 137 | 2 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-43 | 37 | 137 | 2 | 111 | B3 domain-containing transcription factor NGA1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822547.1 | 9e-90 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 6e-73 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | A0A1E5WI63 | 2e-88 | A0A1E5WI63_9POAL; Putative B3 domain-containing protein | ||||
STRING | Sb07g003880.1 | 2e-88 | (Sorghum bicolor) | ||||
STRING | GRMZM2G180168_P01 | 2e-88 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 |