PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01156.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 547aa MW: 57075.7 Da PI: 10.1255

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01156.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.8	2.6e-42	238	313	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ k+y+ rhkvC++h+k+p v+v+g+eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+ Zmw_sc01156.1.g00050.1.am.mk 238 RCQVEGCDVDLTGSKTYYYRHKVCSAHAKTPLVIVAGIEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKP 313 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-33	231	300	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.915	236	313	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.06E-40	237	316	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.1E-33	239	312	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048653	Biological Process	anther development
GO:2000025	Biological Process	regulation of leaf formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MACYVALRFL LVPLAGQRNA GTVPLAATNT AFSLQGYGVR KPHYKNPGSA RLGTPLLTRE 60 ASATATAFLP SIASAQPIEM ASAKGGGRDK LGQLVCARSR RVILSAKPPR SCPSASPPPS 120 LSSLPEREKR GAENLLPPLQ SSSPRAFPAH RRTIMATASA GAGGGSGGGG GDDQLHGLKF 180 GKKIFFEDAG STSGDGSSSG SGSGSAPPPP ASPRATGGGR RGTGAAGGAS SSSAQPARCQ 240 VEGCDVDLTG SKTYYYRHKV CSAHAKTPLV IVAGIEQRFC QQCSRFHQLS EFDQGKRSCR 300 RRLAGHNERR RKPPPGPLAS RYGRVAASFG EEPSRFRSFM LDFSYPRVPS SMRDGWPAAR 360 PGERVPGSIQ WQANLDPHHH HSAVAGYGLH PYGSQRSSAP RPSAFPGTEL PPGGCLAGAP 420 ADSSCALSLL STQPWDTTHS ASHDRAATLS STGGFGGNPV TPSLMASNYI TPSPWTGPPG 480 HEGGQSVPPQ LPPEVPLDEV PSGPSHHGQF SGELELALQG NRPAPRRMDH GSSSTFNQDS 540 NPTDWSL

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MACYVALRFL LVPLAGQRNA GTVPLAATNT AFSLQGYGVR KPHYKNPGSA RLGTPLLTRE  60
ASATATAFLP SIASAQPIEM ASAKGGGRDK LGQLVCARSR RVILSAKPPR SCPSASPPPS  120
LSSLPEREKR GAENLLPPLQ SSSPRAFPAH RRTIMATASA GAGGGSGGGG GDDQLHGLKF  180
GKKIFFEDAG STSGDGSSSG SGSGSAPPPP ASPRATGGGR RGTGAAGGAS SSSAQPARCQ  240
VEGCDVDLTG SKTYYYRHKV CSAHAKTPLV IVAGIEQRFC QQCSRFHQLS EFDQGKRSCR  300
RRLAGHNERR RKPPPGPLAS RYGRVAASFG EEPSRFRSFM LDFSYPRVPS SMRDGWPAAR  360
PGERVPGSIQ WQANLDPHHH HSAVAGYGLH PYGSQRSSAP RPSAFPGTEL PPGGCLAGAP  420
ADSSCALSLL STQPWDTTHS ASHDRAATLS STGGFGGNPV TPSLMASNYI TPSPWTGPPG  480
HEGGQSVPPQ LPPEVPLDEV PSGPSHHGQF SGELELALQG NRPAPRRMDH GSSSTFNQDS  540
NPTDWSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-30	239	312	11	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00307	DAP	Transfer from AT2G42200	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974838.1	1e-173	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q7EXZ2	1e-138	SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBL	A0A3Q8AS14	1e-177	A0A3Q8AS14_9POAL; Squamosa-promoter binding protein-like protein
STRING	Si013870m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Miura K, et al. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat. Genet., 2010. 42(6): p. 545-9 [PMID:20495564] Jiao Y, et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat. Genet., 2010. 42(6): p. 541-4 [PMID:20495565] Springer N Shaping a better rice plant. Nat. Genet., 2010. 42(6): p. 475-6 [PMID:20502488] Wang Y,Li J Branching in rice. Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9 [PMID:21144796] Wang J,Kong L,Gao G,Luo J A brief introduction to web-based genome browsers. Brief. Bioinformatics, 2013. 14(2): p. 131-43 [PMID:22764121] Luo L,Li W,Miura K,Ashikari M,Kyozuka J Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways. Plant Cell Physiol., 2012. 53(10): p. 1793-801 [PMID:22960246] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853] Cruz-Garcia GS,Struik PC Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1. Econ. Bot., 2015. 69(2): p. 99-113 [PMID:26160981] Srikanth B, et al. Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions. Gene, 2016. 576(1 Pt 3): p. 441-50 [PMID:26519999] Perignon M, et al. Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial. Nutrients, 2016. [PMID:26751473] Kim SR, et al. Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. Rice (N Y), 2016. 9(1): p. 12 [PMID:26987543]