PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01153.1.g00260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 430aa MW: 47089.5 Da PI: 7.028 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.3 | 3.4e-28 | 166 | 220 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wtp+LH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQkYR++ Zmw_sc01153.1.g00260.1.am.mk 166 KRKVDWTPDLHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQKYRSH 220 5799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.937 | 163 | 222 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 164 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-27 | 166 | 220 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.33E-17 | 166 | 223 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-8 | 169 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MLEVLRSPGS KAADQLHVVD AGFPTSTDQC GSGGDEFMLD GENLLDYIDF TCCDVPSFFD 60 ADGDILPDLE TELLAEFEDH ERGGGKPPDD VASSSQGDHH HHKEDEERLL LQVEEEEGQT 120 AQTKKSGSGD EVSLASAVTS TDTSKSSSAS AEKKKKKKRS KNSNGKRKVD WTPDLHRRFV 180 QAVEQLGIDK AVPSRILEIM GIEGLTRHNI ASHLQKYRSH RKHLMAQEAE AASWAKKRQM 240 YAAAPGAPRL TKDMPPAAAA PWVVPTTIRF PSPPFGRPLH VWGHPSTALE ATAAPMLPVW 300 PRHLAPVDRA YWHQPQYNGA RKWGPMTQGT PCVPPPIMPR FPTPPVPGTR MPHPMYRPPM 360 PPPPQITSSN LATLQLRLDA HPSKESIDAA IGDVLAKPWL PLPLGLKPPS LDSVMSELHK 420 QGIPKIPPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-16 | 171 | 222 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | KKKKKKR |
2 | 154 | 161 | KKKKRSKN |
3 | 154 | 167 | KKKKRSKNSNGKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818980.1 | 1e-133 | probable transcription factor GLK2 isoform X3 | ||||
Swissprot | Q5NAN5 | 1e-100 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A2T7DTH8 | 1e-133 | A0A2T7DTH8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IPG3 | 1e-133 | A0A2T8IPG3_9POAL; Uncharacterized protein | ||||
STRING | Si001336m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Publications ? help Back to Top | |||
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