PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01153.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 366aa MW: 40673.1 Da PI: 6.7148

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01153.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.7	4e-17	317	343	26	52
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkiksl 52 +vc+T++KriCRq+GI+RWP+Rki+++ Zmw_sc01153.1.g00180.1.sm.mkhc 317 EVCPTTMKRICRQHGISRWPSRKINKV 343 5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.82	261	364	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-14	317	343	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDLDPSPSSA PGDGACGSGD VRPFDTLTTS LLFSSVSTSQ PLPPLPANSS SWLTPPSPLW 60 LFEDRQLLPI ETPAALPEAA AAVVDEVQRA RSGNSDTTTK RVEQINQKWQ LHLSLDDDVT 120 ENSSLFKERL TQALRYFKDS TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLVQY 180 RAVSMMYMFS VDGDNAGELG LPGRVYKQKV PEWTPNVQYY SSKEYPRLNH AISYNVHGTV 240 ALPVFDPSAQ ACIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEIFD HPNVQNEEFK 300 KDVKIDSSEG GISESPEVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KQTKLLTREA 360 HLEKAA

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDLDPSPSSA PGDGACGSGD VRPFDTLTTS LLFSSVSTSQ PLPPLPANSS SWLTPPSPLW  60
LFEDRQLLPI ETPAALPEAA AAVVDEVQRA RSGNSDTTTK RVEQINQKWQ LHLSLDDDVT  120
ENSSLFKERL TQALRYFKDS TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLVQY  180
RAVSMMYMFS VDGDNAGELG LPGRVYKQKV PEWTPNVQYY SSKEYPRLNH AISYNVHGTV  240
ALPVFDPSAQ ACIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEIFD HPNVQNEEFK  300
KDVKIDSSEG GISESPEVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KQTKLLTREA  360
HLEKAA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457049.1	1e-168	protein NLP3
Swissprot	Q5NB82	1e-153	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A1B6Q0K4	1e-170	A0A1B6Q0K4_SORBI; Uncharacterized protein
TrEMBL	A0A3L6SJK1	1e-170	A0A3L6SJK1_PANMI; Protein NLP3
STRING	Pavir.Eb00046.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60