PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01150.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 466aa MW: 51249.7 Da PI: 10.2124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01150.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.3	2.7e-08	163	203	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Zmw_sc01150.1.g00100.1.am.mk 163 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.085	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-14	159	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-12	159	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-13	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	164	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.55E-6	177	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MDFDMLMNST PEAQLELMNA MIQLEQQLTA FPDHGAMMVP STPPSPCVQQ APHHFASSVP 60 HMSAGTNGRA AYHDYQYYSQ QVTPPSSCNS SSSNRSEYTP AHQAPAAGTE GGGNGGDVAG 120 SSAMREMIFR VAALQPVNIE PEMVRPPKRR NVRISTDPQS VAARMRRERI SERIRILQRL 180 VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAASGRR PTAPPPEDNN GAVTYTSAGR 240 VNGQWTFVLA QYRAKPQLSH LRDATDGETW RRPGFRGRAP AVRLGPFLFT SYAGAQLQPL 300 CALQPRADCR RLAADRASLS TVNQFRPARD RFCRRPLACA RVKLLLMPRR LVSGCPRATT 360 LPSHVPGIFG ARRPGHLPAP VQKYFLLPIR PLSATAAVPV CECGKFHCRV LSSPTKSPAA 420 NLSCMGTLEY YTCRAIPCAK IWWWPRADSE RTGAPLLPPK TEDRLD

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MDFDMLMNST PEAQLELMNA MIQLEQQLTA FPDHGAMMVP STPPSPCVQQ APHHFASSVP  60
HMSAGTNGRA AYHDYQYYSQ QVTPPSSCNS SSSNRSEYTP AHQAPAAGTE GGGNGGDVAG  120
SSAMREMIFR VAALQPVNIE PEMVRPPKRR NVRISTDPQS VAARMRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAASGRR PTAPPPEDNN GAVTYTSAGR  240
VNGQWTFVLA QYRAKPQLSH LRDATDGETW RRPGFRGRAP AVRLGPFLFT SYAGAQLQPL  300
CALQPRADCR RLAADRASLS TVNQFRPARD RFCRRPLACA RVKLLLMPRR LVSGCPRATT  360
LPSHVPGIFG ARRPGHLPAP VQKYFLLPIR PLSATAAVPV CECGKFHCRV LSSPTKSPAA  420
NLSCMGTLEY YTCRAIPCAK IWWWPRADSE RTGAPLLPPK TEDRLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	149	RPPKRR
2	163	168	RMRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008678454.2	4e-96	transcription factor bHLH69
TrEMBL	A0A0A8YXS6	1e-102	A0A0A8YXS6_ARUDO; Uncharacterized protein
STRING	GRMZM2G471635_P01	2e-95	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3103	36	82