PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01150.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 384aa MW: 40717 Da PI: 5.5857

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01150.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.5e-14	275	326	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N +L k+ ee+ ++ Zmw_sc01150.1.g00040.1.sm.mkhc 275 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNAELMKKQEEMMEMQ 326 79****************************************9999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.9E-12	271	336	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	273	324	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.76E-28	275	329	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-14	275	325	No hit	No description
Pfam	PF00170	1.8E-12	275	327	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-10	275	324	No hit	No description
PROSITE pattern	PS00036	0	278	293	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDLKDGERRG PPLARQGSIY SLTFDEFQST LGGVGGGLGK DFGSMNMDEL LRSIWTAEES 60 QAMASASGAA APAVEDGALQ RQGSLTLPRT LSVKTVDEVW RDFVREGAPP DGGGGGEPQP 120 SRQPTLGEMT LEEFLVRAGV VRENPAAAAA VAAAGISAPP VAAPRPIQAV GNGSSIFFGN 180 FGGASDAGAG AMGFAPVGIG DPSTIGNGLM PGVAGMGGAP VSVSPLDTSV AQLDSVGKGN 240 SDLSSPSPMA PVPYPFDGVI RGRRSGAGVE KVVERRQRRM IKNRESAARS RARKQAYTME 300 LEAEVQKLKE LNAELMKKQE EMMEMQKNQV LETVSNPYAQ KKRCLRRTLT GPWNFNWTET 360 FIVNPEALAH GEKSAFMWHL WADN

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDLKDGERRG PPLARQGSIY SLTFDEFQST LGGVGGGLGK DFGSMNMDEL LRSIWTAEES  60
QAMASASGAA APAVEDGALQ RQGSLTLPRT LSVKTVDEVW RDFVREGAPP DGGGGGEPQP  120
SRQPTLGEMT LEEFLVRAGV VRENPAAAAA VAAAGISAPP VAAPRPIQAV GNGSSIFFGN  180
FGGASDAGAG AMGFAPVGIG DPSTIGNGLM PGVAGMGGAP VSVSPLDTSV AQLDSVGKGN  240
SDLSSPSPMA PVPYPFDGVI RGRRSGAGVE KVVERRQRRM IKNRESAARS RARKQAYTME  300
LEAEVQKLKE LNAELMKKQE EMMEMQKNQV LETVSNPYAQ KKRCLRRTLT GPWNFNWTET  360
FIVNPEALAH GEKSAFMWHL WADN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973666.1	1e-177	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-149	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A2T7D8L4	1e-176	A0A2T7D8L4_9POAL; Uncharacterized protein
STRING	GRMZM2G157722_P01	1e-167	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]