PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01142.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 793aa MW: 83701.8 Da PI: 10.9355

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01142.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	64.9	3.1e-20	414	461	3	53
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlaka 53 v+ sseq+Cyv+C fC+t vsvP+tslfk+vtvrCGhC+sll+vn++ Zmw_sc01142.1.g00010.1.am.mk 414 VVPSSEQLCYVHCHFCDT---VSVPTTSLFKTVTVRCGHCSSLLTVNMRGL 461 5689***********9...6*********************999765 PP
2	YABBY	55.4	2.5e-17	719	747	142	170
YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170 a+nPdishreafsaaaknWahfP+ihfgl Zmw_sc01142.1.g00010.1.am.mk 719 AGNPDISHREAFSAAAKNWAHFPHIHFGL 747 89*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-19	417	469	IPR006780	YABBY protein
Pfam	PF04690	7.6E-15	719	747	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MAMHGGACTP RARAPTSRRS ILECLRACLV CCGVPRAACM DVATKGWDGA HACLYMLSPA 60 SSSSRDAGDG RVRTYAAAGR HGAHTTELRT LRLAGSRQRR PVAGLRSVRA EPGRQGRKRP 120 CGQIVLITTR STGRSTAGVG PGRRDLRPAS QPGRPVAGAF GQPGSTRRGW SLNPSGARHA 180 ADLSAASPCT HVMQMQDRSG GGRRRGSYDE EAAQRPAGKR RSPSGASQLT AATVVTGDTA 240 QGGDDEPGKT DFDCRARRDR AIDRADAARS TSPTGRPLLV CHDSYALGGI SRVDEEEYGM 300 GSSTRVPPFH SRTPPPRSAL FVRWLPRQIE LLATKKKTHL LAFLLRVLCC CFRQVIPAID 360 RSVGWWLSVG MSSSSSSSSA ASAAVVFPPS PQPQMPQPLL VENLPPLNQL SPVVVPSSEQ 420 LCYVHCHFCD TVSVPTTSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTNI GAAAAAPASV 480 TSAVTTTTTT AINTPPVITS VNNNDHQFHF PNSLNLAPNP PHQHSILDEI SSAHPSFPLL 540 EQQGLSGLIS GARNVVTAPA PPPPLPVAGK GAKEPSPRTN NAVANRLSGS AGARPPLLLS 600 RDVTASRRAL ARASARSSAP ATSVTAVQQQ QQQRATRISG EEAARAVGVQ PLHQVSTSSN 660 ATFSFFDAVR HARCPSDCVL VLSATTTPAA SVAAAGPGRN AGAGRQKREL LQRAREPFAG 720 NPDISHREAF SAAAKNWAHF PHIHFGLMPD HHGLKKTNLL PQEYQRKDGL LKEGLYTAAA 780 AAAAAANMGV TPY

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MAMHGGACTP RARAPTSRRS ILECLRACLV CCGVPRAACM DVATKGWDGA HACLYMLSPA  60
SSSSRDAGDG RVRTYAAAGR HGAHTTELRT LRLAGSRQRR PVAGLRSVRA EPGRQGRKRP  120
CGQIVLITTR STGRSTAGVG PGRRDLRPAS QPGRPVAGAF GQPGSTRRGW SLNPSGARHA  180
ADLSAASPCT HVMQMQDRSG GGRRRGSYDE EAAQRPAGKR RSPSGASQLT AATVVTGDTA  240
QGGDDEPGKT DFDCRARRDR AIDRADAARS TSPTGRPLLV CHDSYALGGI SRVDEEEYGM  300
GSSTRVPPFH SRTPPPRSAL FVRWLPRQIE LLATKKKTHL LAFLLRVLCC CFRQVIPAID  360
RSVGWWLSVG MSSSSSSSSA ASAAVVFPPS PQPQMPQPLL VENLPPLNQL SPVVVPSSEQ  420
LCYVHCHFCD TVSVPTTSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTNI GAAAAAPASV  480
TSAVTTTTTT AINTPPVITS VNNNDHQFHF PNSLNLAPNP PHQHSILDEI SSAHPSFPLL  540
EQQGLSGLIS GARNVVTAPA PPPPLPVAGK GAKEPSPRTN NAVANRLSGS AGARPPLLLS  600
RDVTASRRAL ARASARSSAP ATSVTAVQQQ QQQRATRISG EEAARAVGVQ PLHQVSTSSN  660
ATFSFFDAVR HARCPSDCVL VLSATTTPAA SVAAAGPGRN AGAGRQKREL LQRAREPFAG  720
NPDISHREAF SAAAKNWAHF PHIHFGLMPD HHGLKKTNLL PQEYQRKDGL LKEGLYTAAA  780
AAAAAANMGV TPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	338	KKKTH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22855	5	6