PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01140.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 710aa    MW: 75298.6 Da    PI: 6.2307
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01140.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.8e-31519603186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpy
  Zmw_sc01140.1.g00160.1.am.mk 519 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PSQAKTCPY 598
                                   8*********************************************************************8.77778**** PP

                      trihelix  82 fdqle 86 
                                   fd+l+
  Zmw_sc01140.1.g00160.1.am.mk 599 FDELD 603
                                   ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.236512576IPR017877Myb-like domain
SMARTSM007170.0065516578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-4516575IPR009057Homeodomain-like
CDDcd122038.44E-30518583No hitNo description
PfamPF138374.0E-23518605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDSAF AMSAPPPPPP QPAQPPPPTA GGQELGGPFR YQPLHHHHHA  60
PPMPPHFAHF AGGGIPFTQQ LLHQAATAAG HHPHLQLFQE QQQHHHHHHK PPQPPPPQQP  120
TRWAPQHPHH HHHHHLGFDV EAAVPESSGA AGGSTASGGG ATPGVPPFLA AAMNFKLAVD  180
AGGGSAATGG TDDALNDGGG GGGGMMLHVG GAGADDEAAT ESRLRRWPGD EETSIKEPTW  240
RPLDIDYLHS TSSSKRTGKE KAPTPESPAP AAAAAASYFK KGDDSAAAAA AAASAGGGNY  300
KLFSELEAIC KPGSGGTAGA QTGSGSGLTG DDNVILEPAM PDLPGPEAGD APQLNTSDTS  360
AGEDVAAVVQ RQPQPSSDTT RRKRKRRRQE HLSASASFFE RLVQRLMEHQ ESLHRQFLEA  420
MERRERERAA RNEEWRRQEA EKFAREVAAR AQDRASAAAR EAAIIAYLEK LSGESINLPP  480
PAAPSAEDIS QDAVGKELVA YEGGEAAGGS GALHLSTSRW PKHEVEALIR VRTGLEGRFQ  540
EPGLKGPLWE EVSARMAAAG YGRSAKRCKE KWENINKYFR KAKESGKKRP SQAKTCPYFD  600
ELDRLYSRSS SGNANAGSAG GSGGGAGDEH DAKASSELLD AVVKYPEGPP GFVYDDKDPS  660
SVDAKAPNSE VLRKEGEEGG IGSGRATDDP EPEDHQIQVE ERHGEDDQHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385RRKRKR
2381386RKRKRR
3381387RKRKRRR
4382387KRKRRR
5383387RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A3L6RV100.0A0A3L6RV10_PANMI; Trihelix transcription factor GTL1-like
STRINGSb04g000520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547