PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01125.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 427aa MW: 46278.3 Da PI: 7.1824

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01125.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	197	297	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp +r++a+ ++ yeA+ar+rdP+yG+v+ Zmw_sc01125.1.g00370.1.am.mkhc 197 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVA 275 7***********************89*********************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lqqq+++l+a+la+lk++ Zmw_sc01125.1.g00370.1.am.mkhc 276 HIFALQQQVMTLQAQLASLKAQ 297 ***************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.574	196	298	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-37	197	295	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MPYQKPEPQL EEQDANDVGT CRGSHTCEPP GYSDGLPLSW TTDRPFQGRR TVPALTAGDR 60 VAFEYIRARA VRSCGEYLQA EAVVFYRAHF LANGSEATFI SIRSGGQAAR GRQVHRNTER 120 ILSFHQQIRP ATRPTTELPA SAKAPELPGV APPSSSPRRS TEPRAETHRA SRGKKRAEKP 180 ITVPSEERSE MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS 240 KLLAHLPLAD RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ 300 GHGGHEDAKG YMGSAAEQLG YGCSWYNNSN GGGGPVDSPA TQPCAYSNGG HESITALLQS 360 DYMQQSLYHA LEQAGSADDD GRQAMDYEAP AESSSFGADE SGWRSSSGYQ DCEDLQSVAY 420 AYLNHRS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MPYQKPEPQL EEQDANDVGT CRGSHTCEPP GYSDGLPLSW TTDRPFQGRR TVPALTAGDR  60
VAFEYIRARA VRSCGEYLQA EAVVFYRAHF LANGSEATFI SIRSGGQAAR GRQVHRNTER  120
ILSFHQQIRP ATRPTTELPA SAKAPELPGV APPSSSPRRS TEPRAETHRA SRGKKRAEKP  180
ITVPSEERSE MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS  240
KLLAHLPLAD RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ  300
GHGGHEDAKG YMGSAAEQLG YGCSWYNNSN GGGGPVDSPA TQPCAYSNGG HESITALLQS  360
DYMQQSLYHA LEQAGSADDD GRQAMDYEAP AESSSFGADE SGWRSSSGYQ DCEDLQSVAY  420
AYLNHRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-32	193	291	7	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-32	193	291	7	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797613.1	1e-141	LOB domain-containing protein CRL1-like
Swissprot	Q5UG13	1e-108	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	A0A2S3IU95	1e-139	A0A2S3IU95_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CHM3	1e-139	A0A2T7CHM3_9POAL; Uncharacterized protein
STRING	Pavir.Ib00283.1.p	1e-141	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]