PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01117.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 309aa    MW: 32970.8 Da    PI: 8.1747
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01117.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.51.2e-31100152357
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                                   kv Y+eCl+NhAa+lGgh+vDGCgEfmps+g+    +alkCaACgCHR+FHR++ 
  Zmw_sc01117.1.g00110.1.am.mk 100 KVSYRECLRNHAAALGGHVVDGCGEFMPSPGTG--DDALKCAACGCHRSFHRKDD 152
                                   799**************************7776..89****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-26101151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-19101151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.241103151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-26103151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.0E-30222293IPR009057Homeodomain-like
SuperFamilySSF466892.27E-19222293IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-26232288IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
LSVSGLGDGE SAVEDSGSGA GGCEWTECRS HALGRPVSGC QATHALMEFT SSRGQEQVPI  60
QEMGASSTPP LAPAAVPRAP PTSSSGNGAG AAASAAPLPK VSYRECLRNH AAALGGHVVD  120
GCGEFMPSPG TGDDALKCAA CGCHRSFHRK DDGQPRQLLL PAPAPAPPPP VTPTPPRVPL  180
LMPPPHPSYP HYVPPPFSYH GTPSGSGGTT TESSSEERGT PSADAAAQPA RRKRFRTKFT  240
PEQKEQMLAF AERLGWRMQR QDEALVEQFC AQVGVRRQVF KVWMHNNKHI SRRQPQQEQQ  300
SQQQQQQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-272332891874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.18e-92zinc-finger homeodomain protein 6-like
SwissprotB8AX532e-87ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A368QET72e-90A0A368QET7_SETIT; Uncharacterized protein
STRINGPavir.J15638.1.p1e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145