PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01117.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 97aa    MW: 10652.8 Da    PI: 9.1754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01117.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-081764347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  +WT    +++ +a + +  +   +W+ +ar+mg  +++ +++ ++ ++
  Zmw_sc01117.1.g00080.1.am.mk 17 AWTHRQNKQFECALAVYDRDtpdRWHNVARYMGGAKSPDEVRRHYEQL 64
                                  7*****************99*************999*********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1331065IPR017877Myb-like domain
SMARTSM007177.7E-61467IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-101672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-41771IPR009057Homeodomain-like
PfamPF002497.3E-61764IPR001005SANT/Myb domain
CDDcd001678.40E-71765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MATGGGSSKQ QGSSASAWTH RQNKQFECAL AVYDRDTPDR WHNVARYMGG AKSPDEVRRH  60
YEQLIEDVAQ IEAGQVPLFP SFAPAARGAA GLARQHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-231482773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441575.21e-34protein RADIALIS-like 3 isoform X1
SwissprotQ1A1732e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLJ3MA345e-37J3MA34_ORYBR; Uncharacterized protein
STRINGOB05G34580.19e-38(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230