PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01111.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25022.8 Da    PI: 7.9319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01111.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1791145256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++keq + Le+ F++++ +s +++ eLA++++Lt rqV vWFqNrRa+ k
  Zmw_sc01111.1.g00030.1.sm.mk  91 RKKLQLSKEQATLLEDTFRSHNILSYAQKHELARRVNLTPRQVEVWFQNRRARTK 145
                                   678899***********************************************98 PP
2HD-ZIP_I/II111.84.6e-3691178188
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk++lskeq++lLE++F++++ L+  +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++ +l+ en+rL+
  Zmw_sc01111.1.g00030.1.sm.mk  91 RKKLQLSKEQATLLEDTFRSHNILSYAQKHELARRVNLTPRQVEVWFQNRRARTKLKQTEVDCEILKRCCASLTVENQRLK 171
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLr 88 
                                   +e   L+
  Zmw_sc01111.1.g00030.1.sm.mk 172 HELVGLQ 178
                                   *998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-1875146IPR009057Homeodomain-like
SuperFamilySSF466893.46E-1881148IPR009057Homeodomain-like
PROSITE profilePS5007117.03887147IPR001356Homeobox domain
SMARTSM003892.5E-1289151IPR001356Homeobox domain
PfamPF000466.9E-1591145IPR001356Homeobox domain
CDDcd000868.10E-1391148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003401.4E-11147191IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-9147177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSYSPSCMEE EDLGAWLGLG IGGGGGGGGG CSPSRSHGER WSSVRFDKQD EMRGCGYEQA  60
ENKKSDDKGR TRKRCPSPSE EEDDGGDGGA RKKLQLSKEQ ATLLEDTFRS HNILSYAQKH  120
ELARRVNLTP RQVEVWFQNR RARTKLKQTE VDCEILKRCC ASLTVENQRL KHELVGLQRS  180
GAVAGLYVVD NQFPRAAPAD TVSVCPSCEK VTLTSVGDTS NKSSSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.11e-78homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F69e-57HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX73e-77A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m7e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448