PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01097.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31261.6 Da    PI: 10.8548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01097.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.82.5e-3289139151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++
  Zmw_sc01097.1.g00150.1.am.mk  89 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 139
                                   79***********************************************86 PP
2K-box51.83.6e-181401933484
                         K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskK...nellleqieelqkke 84 
                                     Rhl+GedLesL+lkeLqqLeqqLe+slk+iRs+K    + + +q + +q+++
  Zmw_sc01097.1.g00150.1.am.mk 140 DSRHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKlveRQKMARQQQLQQQQQ 193
                                   57*********************************9332233333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-4381140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.09581141IPR002100Transcription factor, MADS-box
CDDcd002656.27E-4082141No hitNo description
SuperFamilySSF554551.57E-3082157IPR002100Transcription factor, MADS-box
PROSITE patternPS00350083137IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-3283103IPR002100Transcription factor, MADS-box
PfamPF003192.3E-2790137IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-32103118IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-32118139IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.917120212IPR002487Transcription factor, K-box
PfamPF014861.4E-13138193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVMTRWTDAD AGRSAVELQL HDPRRRLRHL PIASPNRSST ASTTPWKPRD SLRLPPHASS  60
TPPRGDRSLF FSNLSQETRA MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD  120
AEVAVIVFSP KGKLYEYATD SRHLMGEDLE SLNLKELQQL EQQLESSLKH IRSRKLVERQ  180
KMARQQQLQQ QQQVQWDQHT QTPAQAQTSF SSSSFLMRQD QHALPPPSNI CYPPVTMGER  240
GEEVVAAAAA LQAQGQAQAQ LRVGNLPPWM LSHLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1981139159MEF2 CHIMERA
6byy_B2e-1981139159MEF2 CHIMERA
6byy_C2e-1981139159MEF2 CHIMERA
6byy_D2e-1981139159MEF2 CHIMERA
6bz1_A2e-1981139159MEF2 CHIMERA
6bz1_B2e-1981139159MEF2 CHIMERA
6bz1_C2e-1981139159MEF2 CHIMERA
6bz1_D2e-1981139159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105333.24e-74zea apetala homolog 1
SwissprotQ6Q9I21e-63MAD15_ORYSJ; MADS-box transcription factor 15
TrEMBLB6TDJ61e-79B6TDJ6_MAIZE; MADS-box transcription factor 15
STRINGOB07G10630.15e-64(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Publications ? help Back to Top
  1. Cai Q, et al.
    [PAEs in composts of municipal sludge and rice straw].
    Ying Yong Sheng Tai Xue Bao, 2003. 14(11): p. 1993-6
    [PMID:14997664]
  2. Wang K, et al.
    DEP and AFO regulate reproductive habit in rice.
    PLoS Genet., 2010. 6(1): p. e1000818
    [PMID:20107517]
  3. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  4. Ramanujam R,Yishi X,Liu H,Naqvi NI
    Structure-function analysis of Rgs1 in Magnaporthe oryzae: role of DEP domains in subcellular targeting.
    PLoS ONE, 2012. 7(7): p. e41084
    [PMID:22927898]
  5. Ang TN,Ngoh GC,Chua AS,Lee MG
    Elucidation of the effect of ionic liquid pretreatment on rice husk via structural analyses.
    Biotechnol Biofuels, 2012. 5(1): p. 67
    [PMID:22958710]
  6. Zhang G,Huang K,Jiang X,Huang D,Yang Y
    Acetylation of rice straw for thermoplastic applications.
    Carbohydr Polym, 2013. 96(1): p. 218-26
    [PMID:23688473]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Hu S, et al.
    A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.
    Rice (N Y), 2013. 6(1): p. 24
    [PMID:24280027]
  9. Ji Y, et al.
    A comprehensive assessment of human exposure to phthalates from environmental media and food in Tianjin, China.
    J. Hazard. Mater., 2014. 279: p. 133-40
    [PMID:25051237]
  10. Huang Y, et al.
    Phthalates in Commercial Chinese Rice Wines: Concentrations and the Cumulative Risk Assessment to Adult Males in Shanghai.
    Biomed. Environ. Sci., 2014. 27(10): p. 819-23
    [PMID:25341819]
  11. Tamaki S, et al.
    FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(8): p. E901-10
    [PMID:25675495]
  12. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]