PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01091.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 446aa MW: 49188.6 Da PI: 8.9685

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01091.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.3e-07	36	75	54	89
FAR1 54 traetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 + C a+++v ++ +gkw+v+kl+ eHnHel Zmw_sc01091.1.g00230.1.am.mkhc 36 DASAAAERCSAMMEVVATDgaggKGKWKVSKLVVEHNHEL 75 55566789****99988888999************9 PP
2	FAR1	24.8	7e-08	102	166	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................t 48 fY eY+++vGF+ r ++++s ++ge + ++f C + ++++ +k + Zmw_sc01091.1.g00230.1.am.mkhc 102 FYYEYGERVGFKARAGSNRRSVDDGEKIVQRFICWRGNYTNRWSKGkdsdegkeaeelveegddA 166 9*********************************9988877766654455555555555554441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-5	35	75	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.0E-5	102	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAGEAAAPAP GPEASAAPAN PPEPLTQSGA GDEPEDASAA AERCSAMMEV VATDGAGGKG 60 KWKVSKLVVE HNHELRVAPG EVAANVPALG MEFDSVEDAK GFYYEYGERV GFKARAGSNR 120 RSVDDGEKIV QRFICWRGNY TNRWSKGKDS DEGKEAEELV EEGDDAARKR KREPNKRRNR 180 MPVTKTTEVI EVEKGVGMAG TGNGSTSRKG RNKDLVEKDG DPVDMEETHD GTADDEDDEA 240 GSEDGVDEEV QMVKEKRGRG RPKKAVRENE ARQARVLREL GLKVSQYDNE ERKKILGKYL 300 SKRRSRPTAA RPTKIASQQA LAERRKRGDG GRFLASECHQ PSQPSERRSK RLERQNLKKE 360 EEKNEVSNSE PRRATSKKNK NVDVRRQQQS PLDSNKKKKG RQGPPEPEEI EIPLRVDPAT 420 APYVTQQFGL GSLQGFPGMS PFGQVT

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAGEAAAPAP GPEASAAPAN PPEPLTQSGA GDEPEDASAA AERCSAMMEV VATDGAGGKG  60
KWKVSKLVVE HNHELRVAPG EVAANVPALG MEFDSVEDAK GFYYEYGERV GFKARAGSNR  120
RSVDDGEKIV QRFICWRGNY TNRWSKGKDS DEGKEAEELV EEGDDAARKR KREPNKRRNR  180
MPVTKTTEVI EVEKGVGMAG TGNGSTSRKG RNKDLVEKDG DPVDMEETHD GTADDEDDEA  240
GSEDGVDEEV QMVKEKRGRG RPKKAVRENE ARQARVLREL GLKVSQYDNE ERKKILGKYL  300
SKRRSRPTAA RPTKIASQQA LAERRKRGDG GRFLASECHQ PSQPSERRSK RLERQNLKKE  360
EEKNEVSNSE PRRATSKKNK NVDVRRQQQS PLDSNKKKKG RQGPPEPEEI EIPLRVDPAT  420
APYVTQQFGL GSLQGFPGMS PFGQVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463799.1	1e-115	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
TrEMBL	A0A0E0KJN7	1e-121	A0A0E0KJN7_ORYPU; Uncharacterized protein
STRING	OPUNC03G33070.1	1e-122	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18