PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01091.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 349aa MW: 39914.7 Da PI: 9.6398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01091.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	44	172	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg Zmw_sc01091.1.g00180.1.am.mk 44 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 123 69*************************.89***********556667899********************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg d++++s+ +g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Zmw_sc01091.1.g00180.1.am.mk 124 FWKATGIDRPIYSAtsSGKSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 172 ********99888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.93	43	199	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-56	43	199	IPR003441	NAC domain
Pfam	PF02365	4.1E-25	45	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MRRWPRRWGW PPVGEGVRRQ ETGRDRRAAE TWSDGDGEED DVVLPGFRFH PTDEELVSFY 60 LRRKVARKPL SVEIIKEMDI YKHDPWDLPK ASTAGGEKEW YFFCLRGRKY RNSIRPNRVT 120 GSGFWKATGI DRPIYSATSS GKSIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPMAAAANS 180 ASPSMQEAEV WTICRIFKRN ITYRRQQQQQ QVWRQPAAAG SNTPPPAYLS SNNGSFESDG 240 SRDEYMNRLP VTAPGISHHQ HVSSHQVNML NAGSSCFLRD SLHSQQWFNL NSLTVPEQKP 300 QVTPAAMTIA FQQNHAANEF SRDGYLEEIA RFMEISDPTS TAFYDCRYA

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MRRWPRRWGW PPVGEGVRRQ ETGRDRRAAE TWSDGDGEED DVVLPGFRFH PTDEELVSFY  60
LRRKVARKPL SVEIIKEMDI YKHDPWDLPK ASTAGGEKEW YFFCLRGRKY RNSIRPNRVT  120
GSGFWKATGI DRPIYSATSS GKSIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPMAAAANS  180
ASPSMQEAEV WTICRIFKRN ITYRRQQQQQ QVWRQPAAAG SNTPPPAYLS SNNGSFESDG  240
SRDEYMNRLP VTAPGISHHQ HVSSHQVNML NAGSSCFLRD SLHSQQWFNL NSLTVPEQKP  300
QVTPAAMTIA FQQNHAANEF SRDGYLEEIA RFMEISDPTS TAFYDCRYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-49	45	199	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-49	45	199	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-49	45	199	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-49	45	199	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-49	45	200	22	169	NAC domain-containing protein 19
3swm_B	7e-49	45	200	22	169	NAC domain-containing protein 19
3swm_C	7e-49	45	200	22	169	NAC domain-containing protein 19
3swm_D	7e-49	45	200	22	169	NAC domain-containing protein 19
3swp_A	7e-49	45	200	22	169	NAC domain-containing protein 19
3swp_B	7e-49	45	200	22	169	NAC domain-containing protein 19
3swp_C	7e-49	45	200	22	169	NAC domain-containing protein 19
3swp_D	7e-49	45	200	22	169	NAC domain-containing protein 19
4dul_A	7e-49	45	199	19	165	NAC domain-containing protein 19
4dul_B	7e-49	45	199	19	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981565.1	1e-169	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	3e-80	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	K4AC40	1e-168	K4AC40_SETIT; Uncharacterized protein
STRING	Si036447m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]