PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01090.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 399aa    MW: 42444.7 Da    PI: 6.2389
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01090.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.5e-19314348135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+C ttkTp+WR gp+g+ tLCnaCGl+y  kg+
  Zmw_sc01090.1.g00170.1.sm.mk 314 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 348
                                   ******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-17308363IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.123308347IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15310369No hitNo description
Gene3DG3DSA:3.30.50.103.4E-15312347IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.65E-19313369No hitNo description
PfamPF003201.8E-16314348IPR000679Zinc finger, GATA-type
PROSITE patternPS003440314339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTMSPFFLYN EKEGIDDTPA NLEDGWPRGG LSCPDDELNK VVPVEYFDFD KFPADNTPDD  60
VLGLDGSALS ETSGHAAPTS ALPTASDSAG PCPALDGAAA TGFVPPFQQP GLVDVLDIDS  120
SPPLPDELSC LVATFFEPSW PAQHTLYGVI PDLVPPLPAQ DSESLNCSIA TCTVPLFPAL  180
DVASRSAPLL PAQHAVAGAV VPDTAPPLRA HDTVPPAGPP ATCSTSSGCV SSMPWEHESA  240
PSVAPSPIAA TSVVPRKQRH RSVTRRNPSW LPKSQFYEKP PAAPRAAPSS LKAGGNDKPP  300
VAKHRRNRER DRVCSHCSTT KTPQWRAGPR GPGTLCNACG LRYTDKGSLL ETYRPTTSPS  360
FDSGKHSNRP SKAAKIMEKA ELAKVMDDKY RRRLSESSP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2069137