PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01080.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 782aa    MW: 85283 Da    PI: 6.8704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01080.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.7e-152980451
                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
                        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51
                                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNr
  Zmw_sc01080.1.g00180.1.sm.mkhc 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNR 80
                                    6789***********************************************9 PP
2START68.22.3e-22249331125204
                                     EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS
                           START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200
                                     i+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + ++k++ a+l
  Zmw_sc01080.1.g00180.1.sm.mkhc 249 ICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAAL 327
                                     899*****999999999*************************************************************9 PP

                                     XXXX CS
                           START 201 qrqc 204
                                     ++ +
  Zmw_sc01080.1.g00180.1.sm.mkhc 328 RHIR 331
                                     9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.5522380IPR001356Homeobox domain
SMARTSM003899.7E-102591IPR001356Homeobox domain
SuperFamilySSF466891.11E-122780IPR009057Homeodomain-like
CDDcd000862.48E-132896No hitNo description
PfamPF000467.0E-132980IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-143180IPR009057Homeodomain-like
CDDcd146865.15E-589126No hitNo description
SMARTSM002349.2E-5162333IPR002913START domain
SuperFamilySSF559614.81E-17184334No hitNo description
PfamPF018528.9E-20249331IPR002913START domain
PROSITE profilePS5084812.499249314IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-7253303IPR023393START-like domain
PfamPF086709.5E-27613712IPR013978MEKHLA
PfamPF086704.5E-15735781IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MAAMVAAGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR SFYCGEDICR EKQRKEASRL QTVNRKLTAM NKLLMEENDR  120
LQKQVSRLVY ENGYMKQQLH NPSVATTDTS CDSVVTSGQH HQQQNPAAPR PLRDANNPAG  180
LLAIAEETLA EFLSKATGTA VDWVQMVGMK VAEILKDRPS WYRDCRCVDV LHVIPTGNGG  240
TIEIIYMQIC ERSLTQSTGG PSGPNTPNFV RAEVLPSGYL IRPCEGGGSM IHIVDHVDLD  300
AWSVPEVLRP LYESPKILAQ KMTIAALRHI RQIAHESSGE MPYGGGRQPA VLRTFSQRLS  360
SDGAEDVTIA INSSPNKLVG SHVNSSQLFS AIGGGILCAK ASMLLQNVPP ALLVRFLREH  420
RSEWADPGVD AYSAAALRAS PYAVPGLRAS GFMGSQVILP LAHTLEHEEL CSGVDENAAG  480
ACAQLVFAPI DESFADDAPL LPSGFRVTPL DAKTDPPSGT RTLDLASTLE VGSGGTTRAS  540
SDASSTSSTR SVLTIAFQFS YENHLRESVA AMARQYVRTV VASVQRVAMA IAPSRIGGQI  600
EMKQTPGSPE AQTLARWIGR SYRFHTGAEL LRTETLCTDS SLKALWQHSD SIMCCSLKAA  660
PVFTFANQAG LDMLETTLIA LQDISLEKIL DDDGRKALCS EYPKIMQQAC TNHRPVNANQ  720
PSWKCYTDII NHFFGFAYLP GGVCISSMGR PVSYEQAVAW KVLSDDDSPH CLAFMFVNWS  780
FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1D6KX690.0A0A1D6KX69_MAIZE; Homeobox-leucine zipper protein ATHB-14
STRINGSi034228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]