PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01070.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 303aa    MW: 32546.3 Da    PI: 11.3296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01070.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.92.7e-111231502754
                                   HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                                    ++++ LAk+l+L  rqV vWFqNrRa 
  Zmw_sc01070.1.g00090.1.am.mk 123 CKQKAALAKQLNLRPRQVEVWFQNRRAS 150
                                   68999*********************96 PP
2HD-ZIP_I/II82.18.1e-271221912591
                   HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                                   + ++K++la++L+l+prqv+vWFqnrRA    Rtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  Zmw_sc01070.1.g00090.1.am.mk 122 SCKQKAALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 191
                                   679************************988889**********************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.5E-481158IPR001356Homeobox domain
PfamPF000461.0E-8122150IPR001356Homeobox domain
CDDcd000861.38E-6122156No hitNo description
Gene3DG3DSA:1.10.10.601.4E-9124149IPR009057Homeodomain-like
SuperFamilySSF466891.04E-8124159IPR009057Homeodomain-like
PROSITE profilePS5007111.58124154IPR001356Homeobox domain
PfamPF021832.6E-10158192IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-23158201IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-4209246IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAQEDVHLSD AGLALGLSLG GGGATSDAAR RSPTGSTRQR RASPPCALEP SLTLSLPDEA  60
TPAXXXRGGG GGRAGVVHGA RRRRRGRRRR DHAEEAEAHQ GAVRAPGGPL QGAQHAQPGK  120
RSCKQKAALA KQLNLRPRQV EVWFQNRRAS RARRTKLKQT EVDCEFLKRC CETLTEENRR  180
LQRELQELRA LKLAAPAGAP PSPAVPFYMQ LPAATLSTLT EENRRLQREL QELRALKLAA  240
PAGAPPSPAV PFYMQLPAAT LSVCPSCDRL GGPAAAKAAD ADRPMGRTAT HHLFNPFARS  300
AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087RRRRRGRR
28390RRGRRRRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797738.12e-61homeobox-leucine zipper protein HOX19-like isoform X1
SwissprotA2XE768e-57HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL48e-57HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3L6TSB88e-63A0A3L6TSB8_PANMI; Homeobox-leucine zipper protein HOX19 isoform X2
STRINGPavir.J25440.1.p3e-62(Panicum virgatum)