PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01068.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 548aa MW: 59665 Da PI: 11.02 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.6 | 4.7e-15 | 233 | 264 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+ +T +WR+gp g+ tLCnaCG++ + Zmw_sc01068.1.g00180.1.am.mk 233 CVQCGSAETLQWRSGPLGQGTLCNACGVRLKA 264 ****************************9986 PP | |||||||
2 | GATA | 47.8 | 1.9e-15 | 362 | 396 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+Tp+WR+gp g tLCnaCG+++r +l Zmw_sc01068.1.g00180.1.am.mk 362 CLHCGSTSTPQWREGPMGRHTLCNACGVRHRQGRL 396 99*****************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.888 | 227 | 281 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.5E-14 | 227 | 278 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-12 | 227 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-12 | 228 | 277 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.09E-11 | 232 | 282 | No hit | No description |
Pfam | PF00320 | 1.4E-12 | 233 | 264 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 233 | 258 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-14 | 355 | 414 | No hit | No description |
PROSITE profile | PS50114 | 13.85 | 356 | 392 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.2E-16 | 356 | 410 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 359 | 394 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.42E-12 | 361 | 408 | No hit | No description |
Pfam | PF00320 | 3.1E-13 | 362 | 396 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 362 | 387 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 548 aa Download sequence Send to blast |
MHPYRPSGSP TAPMLPGRQF SLEFVKSFPV SVTLRKKKSS SSLSRLSFLW LLLTPGRYSL 60 VRSLTRRRHH RLPVAAYPAA VHGDGGGRGR TSGTAVQPPG LGPRTRRSTV TRDMDGAAAA 120 VGGGKEEEEE RPLVYVLGLA VALPLPVAVS RLDAGVPRKA RTSRPRQKPA ARWCAFRMPV 180 PLVRKGKKKS REKARSPRPQ RQRVCLALGV PSPPDLDAAA SSVERTAKKA RRCVQCGSAE 240 TLQWRSGPLG QGTLCNACGV RLKAAGALRE TEQRSPPATQ RMVAEPPPPP SESPALESSP 300 DSPIRQRRAS LRDIYLVRKQ PARERKTPRK EPAPAPAPAI YLVKKKKPSR KPWRPRDTGR 360 QCLHCGSTST PQWREGPMGR HTLCNACGVR HRQGRLLPEY RPAASPTFVP SEHASKHREV 420 LQLRRQQQNS KQPEPVVSDD FPSDRRVDGT GNSGDAPESD EDDKDNVFLL RREPPEKDPY 480 PPTPLHRPLP PPVDNDNPHS GCGGDNGAVA GCSGGNHVTA DAPSTLDSLL LDGPSAPLIV 540 DGDHFLVS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805140.1 | 1e-120 | pollen-specific leucine-rich repeat extensin-like protein 2 | ||||
TrEMBL | A0A0A9D6L5 | 1e-148 | A0A0A9D6L5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J37525.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7273 | 26 | 46 |