PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01068.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 548aa    MW: 59665 Da    PI: 11.02
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01068.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.7e-15233264132
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                   C++Cg+ +T +WR+gp g+ tLCnaCG++ + 
  Zmw_sc01068.1.g00180.1.am.mk 233 CVQCGSAETLQWRSGPLGQGTLCNACGVRLKA 264
                                   ****************************9986 PP

2GATA47.81.9e-15362396135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +Cg+t+Tp+WR+gp g  tLCnaCG+++r  +l
  Zmw_sc01068.1.g00180.1.am.mk 362 CLHCGSTSTPQWREGPMGRHTLCNACGVRHRQGRL 396
                                   99*****************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.888227281IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-14227278IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12227280No hitNo description
Gene3DG3DSA:3.30.50.104.5E-12228277IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.09E-11232282No hitNo description
PfamPF003201.4E-12233264IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14355414No hitNo description
PROSITE profilePS5011413.85356392IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16356410IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14359394IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-12361408No hitNo description
PfamPF003203.1E-13362396IPR000679Zinc finger, GATA-type
PROSITE patternPS003440362387IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MHPYRPSGSP TAPMLPGRQF SLEFVKSFPV SVTLRKKKSS SSLSRLSFLW LLLTPGRYSL  60
VRSLTRRRHH RLPVAAYPAA VHGDGGGRGR TSGTAVQPPG LGPRTRRSTV TRDMDGAAAA  120
VGGGKEEEEE RPLVYVLGLA VALPLPVAVS RLDAGVPRKA RTSRPRQKPA ARWCAFRMPV  180
PLVRKGKKKS REKARSPRPQ RQRVCLALGV PSPPDLDAAA SSVERTAKKA RRCVQCGSAE  240
TLQWRSGPLG QGTLCNACGV RLKAAGALRE TEQRSPPATQ RMVAEPPPPP SESPALESSP  300
DSPIRQRRAS LRDIYLVRKQ PARERKTPRK EPAPAPAPAI YLVKKKKPSR KPWRPRDTGR  360
QCLHCGSTST PQWREGPMGR HTLCNACGVR HRQGRLLPEY RPAASPTFVP SEHASKHREV  420
LQLRRQQQNS KQPEPVVSDD FPSDRRVDGT GNSGDAPESD EDDKDNVFLL RREPPEKDPY  480
PPTPLHRPLP PPVDNDNPHS GCGGDNGAVA GCSGGNHVTA DAPSTLDSLL LDGPSAPLIV  540
DGDHFLVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805140.11e-120pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A0A9D6L51e-148A0A0A9D6L5_ARUDO; Uncharacterized protein
STRINGPavir.J37525.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646