PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01063.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 653aa    MW: 71966.6 Da    PI: 8.0093
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01063.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-343704622103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zmw_sc01063.1.g00010.1.am.mk 370 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFA 441
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F+kg k+ll +i+r+ks+
  Zmw_sc01063.1.g00010.1.am.mk 442 NEFFRKGAKHLLVEIHRRKSS 462
                                   ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-37360454IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-58366459IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.54E-32367459IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.3E-19370393IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-30370459IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-19408420IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340409433IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-19421433IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
METATSTGQL PNVESLSLCM GRGDAVGDYL LSAPAAAHMS GGRRVSAGGR RRDGSCCRSP  60
PPAGLRLRSE SLMDGRLASL RQPLQAKEET EESTRSEAKG RPTPAHVTPC GATELQKTST  120
GEDGALLGHA RTCDSLRKKQ LQCKREDDTL LYCCTTALSC APQTMRCCRS HPYEQLLGHP  180
VICMHGADGL LDCSIATSPV HRLSLPPCPG MMLQSRMPGF RFTDMMMYRV VQRFNQKVLL  240
HKIKTLEYAG RQCSAGQRQA CVDWDDDCSC SRSLWEYALP FASSFSARTD RFVDLRQLLR  300
VTPFAFSNAK CCWTDLLLLH VPSRRIAGRP RKRTEEASAA VAMAFLVERC GEMVVSMESS  360
AHAKPVPAPF LTKTYQLVDD PCTDHIVSWG EDDTTFVVWR PPEFARDLLP NYFKHNNFSS  420
FVRQLNTYGF RKIVADRWEF ANEFFRKGAK HLLVEIHRRK SSQPPTPLPP HQPFHHHHHH  480
LHHQHLNPFA PPPPPPTHPA VYHFQEEPVA AYGGGVHGGG NDGNGSGGDF LAALSEDNRQ  540
LRRRNSLLLS ELAHMKKLYN DIIYFLQNHV TPVTSPSAAA HASQLPAGAG GVASSCKLME  600
LDPDSSSPPP GPDAVPGDAD GTVKLFGVAL QGKKKRLHRE GGDDDDHDQG SEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A5e-213664594106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A5e-213664594106HEAT-SHOCK TRANSCRIPTION FACTOR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394