PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01058.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 175aa MW: 20519.3 Da PI: 8.8598 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.5e-22 | 54 | 109 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++ Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Zmw_sc01058.1.g00130.1.am.mk 54 KKRYHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 109 678899***********************************************998 PP | |||||||
2 | HD-ZIP_I/II | 63.3 | 6e-21 | 57 | 138 | 3 | 84 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +r + q+++LE +F+e + + +++++l+reLgl+prq++ WFqnrR +k+++ d +L+++ d+++ en ++++ Zmw_sc01058.1.g00130.1.am.mk 57 YHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAMREA 137 3477889*******************************************************************9999876 PP HD-ZIP_I/II 84 v 84 Zmw_sc01058.1.g00130.1.am.mk 138 L 138 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-22 | 40 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 48 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.042 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-20 | 52 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-17 | 54 | 112 | No hit | No description |
Pfam | PF00046 | 2.4E-19 | 54 | 109 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.2E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSHSPLSSFP SVRRIALEAT GRPPRSTAEV CVRARAAMDF GDDVMEGSDS QRRKKRYHRH 60 TPRQIQMLEA MFKECPHPDE NQRMQLSREL GLEPRQIKFW FQNRRTQMKA QHERADNCFL 120 RAENDKIRCE NIAMREALRN VICPTCGGPH VADDYFDEQK LRMENARLKE EASLF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828617.1 | 7e-88 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 3e-84 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A1D6QDN7 | 3e-89 | A0A1D6QDN7_MAIZE; Homeodomain leucine zipper family IV protein | ||||
TrEMBL | A0A3L6F4D2 | 6e-89 | A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8 | ||||
STRING | Pavir.Aa00335.1.p | 1e-87 | (Panicum virgatum) | ||||
STRING | Pavir.J34398.1.p | 1e-87 | (Panicum virgatum) | ||||
STRING | GRMZM2G145690_P01 | 7e-87 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15929 | 9 | 15 |