PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01057.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 377aa    MW: 41459.2 Da    PI: 7.1947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01057.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  Zmw_sc01057.1.g00140.1.sm.mk 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                                  678*******************************************97 PP

2Myb_DNA-binding47.34.8e-1567109145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rg++++eE++l+v++++ lG++ W+ Ia  ++ gRt++++k+ w+
  Zmw_sc01057.1.g00140.1.sm.mk  67 RGAFSQEEEDLIVELHAVLGNR-WSQIATQLP-GRTDNEIKNLWN 109
                                   89********************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466891.91E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
CDDcd001673.97E-111761No hitNo description
PROSITE profilePS5129424.95362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2565116IPR009057Homeodomain-like
SMARTSM007179.8E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1367109IPR001005SANT/Myb domain
CDDcd001671.43E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIATQLPGRT DNEIKNLWNS SIKKKLCQKG  120
IDPNTHKPLA EVDRSKVAPT ISTERTSESS DVDPSSGGAI GNLNHLLSET AQSPELLPVL  180
GKQRKEFTSL AHLRVPTKEL FLDQLVPGHD NIASGHLTGP IPNFPFQQLS CYGNGFGSSH  240
GGNTNSLWYN QNEPSGSTIS TVMPPVSPST LSTSTGLNRS PDNQQPGGTA IQSTQFHWDT  300
TDPSSTSSRG SSGSNGLGFE LQGMSSLLEN SVFPWSELAP DKSSQAHLEE EFKWPDLLHG  360
TFTDTPATFF SKQQSTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457686.10.0transcription factor MYB61 isoform X1
RefseqXP_004967646.10.0transcription factor MYB61
SwissprotQ8VZQ22e-89MYB61_ARATH; Transcription factor MYB61
TrEMBLI6V8P20.0I6V8P2_9POAL; Putative R2R3-MYB transcription factor protein
STRINGSi001565m0.0(Setaria italica)
STRINGSb03g011640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]