PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01056.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 308aa MW: 33128 Da PI: 5.3301

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01056.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	135	186	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++t+ eAa+a+++a+ +++g+ Zmw_sc01056.1.g00090.1.am.mk 135 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186 8******.*******8876..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-32	134	194	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-14	135	185	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.078	135	193	IPR001471	AP2/ERF domain
CDD	cd00018	4.84E-32	135	194	No hit	No description
SMART	SM00380	3.6E-39	135	199	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-22	135	194	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-13	136	147	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-13	175	195	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDFSGEIDDF WLQNICEQFH DGEACLPVPE VYSASSTVAH PIPAPQQDFQ YAVFMPQQQV 60 ALVDLTQGYA DASAAAALSA KPAAPLMIQF GGEPSPRPSL TISLPPTSHV WGADVAPLPV 120 HSAAAASVDV EDLRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTPV EAARAYDRAA 180 FRMRGAKAIL NFPNEVGSGG ADFLAPQQPA SRSHSSKRKL HDAHQPDDVE AETAAKSIKT 240 EAFTSPASSL SPATTMASTV TSSSSSEAEM FPISPSGWSW EQFESMFGSL SPLSPHPGHM 300 GFPEVTVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-28	136	199	6	69	ATERF1
3gcc_A	6e-28	136	199	6	69	ATERF1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828794.1	1e-109	ethylene-responsive transcription factor ERF105-like
TrEMBL	A0A3L6PMC1	1e-109	A0A3L6PMC1_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRING	GRMZM2G057386_P01	1e-103	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465