PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01052.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 329aa MW: 35281.2 Da PI: 10.2841 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.8e-27 | 105 | 150 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+l Zmw_sc01052.1.g00140.1.am.mk 105 KPIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRL 150 78******************************************98 PP | |||||||
2 | K-box | 25.6 | 5.2e-10 | 237 | 264 | 44 | 71 |
K-box 44 esLslkeLqqLeqqLekslkkiRskKne 71 +++sl++L++Le +Lek+++kiR++K+ Zmw_sc01052.1.g00140.1.am.mk 237 QTMSLRDLKHLEGRLEKGINKIRARKMA 264 58************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.469 | 97 | 150 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-32 | 97 | 156 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.43E-33 | 99 | 150 | No hit | No description |
PRINTS | PR00404 | 1.5E-26 | 99 | 119 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-24 | 99 | 151 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-24 | 107 | 150 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-26 | 119 | 134 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-26 | 134 | 155 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.8E-6 | 236 | 265 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEMARWVEDV VVGKEERDAF ASVTLCDERR PGLSPPPPAP ISLSGSQSSP VPKQALATIS 60 TLNMMSQTDL SCGPSKVKEQ PATANSGPSS GSTKPGIIRG RIEIKPIENA TNRQVTFCKR 120 RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL TMPGACVALL QGSQKPKPMA AAAAAEEKRG 180 ARIASGDDTS KENWCLGGNA KSREAPLHVG VKATIERYKK ANSDSSNTGT VAEVNAQTMS 240 LRDLKHLEGR LEKGINKIRA RKMAANERGH EQSVGIQMAA ASTSEYDPLV PSDNPPRREA 300 KQEPARVLGE AVWPSVPARL IGRRPRNQG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816640.1 | 1e-47 | MADS-box transcription factor 3 isoform X3 | ||||
Swissprot | Q40704 | 3e-39 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0A9TLG6 | 5e-56 | A0A0A9TLG6_ARUDO; Uncharacterized protein | ||||
STRING | EMT23538 | 3e-48 | (Aegilops tauschii) | ||||
STRING | LPERR01G06160.1 | 2e-48 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP34716 | 3 | 4 |
Publications ? help Back to Top | |||
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