PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01051.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 427aa    MW: 45729.8 Da    PI: 6.7813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01051.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09210232123
                                   ---SS-EEEEEEE--TT-SS-EE CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                                   ldDg +WrKYGqK++ g+++prs
  Zmw_sc01051.1.g00100.1.am.mk 210 LDDGISWRKYGQKDILGAKYPRS 232
                                   58********************8 PP
2WRKY37.74e-122432842159
                                   -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                    r+Y+rCt++   +C++ k+v+r++ dp +++++Y+g H++ 
  Zmw_sc01051.1.g00100.1.am.mk 243 VRAYFRCTHRhsqDCHASKQVQRADGDPLLFDVVYNGYHTCA 284
                                   69*******98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-24196285IPR003657WRKY domain
SuperFamilySSF1182903.14E-19204285IPR003657WRKY domain
PROSITE profilePS5081116.134205281IPR003657WRKY domain
SMARTSM007743.0E-32210285IPR003657WRKY domain
PfamPF031062.0E-6211232IPR003657WRKY domain
PfamPF031066.1E-11244283IPR003657WRKY domain
PROSITE patternPS006780378392IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNFHQVDSSS RSSIGTLISQ RGALVTNISP SERPVPWPRP KTVKAPSSST HLPKSKRSWM  60
TATEQRAAER AVAAMEGLSE ERRALVGELV QVLEMARQLD AHMAGQQLGG GGEERCRALV  120
ATMRASIDRS VRIARSCCAD EAAGRLPVLG RPESQPSGGG DGSPLSAGSD QAGDSRGRGN  180
AAGQCKKRKS TQPKWKTQVR VSAVQDVAPL DDGISWRKYG QKDILGAKYP RSVSAALDPY  240
FLVRAYFRCT HRHSQDCHAS KQVQRADGDP LLFDVVYNGY HTCAQAQAAA RPSNQETPHT  300
ASGENSPPQQ TQAGLEQTTG DSTPMFERTV QPFALPSNNP AYDDGCKTSS GFPAGSVVAA  360
SAFMSSPAVE ATPESQLVTS SSSNHAVGVW NVPEVELAST TNSPMGDMDF MFPLDDAADF  420
LEDAEYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-17207283568OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458250.11e-107probable WRKY transcription factor 41
TrEMBLA0A0A9VEZ71e-112A0A0A9VEZ7_ARUDO; Uncharacterized protein
STRINGSb03g029920.11e-106(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183