PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01050.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 383aa MW: 43248.1 Da PI: 10.7743

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01050.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.6	1e-11	125	169	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ + qky Zmw_sc01050.1.g00210.1.am.mkhc 125 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVANQAQKY 169 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.119	114	174	IPR017930	Myb domain
SMART	SM00717	3.1E-10	122	172	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.71E-13	123	174	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-14	125	172	IPR006447	Myb domain, plants
CDD	cd00167	8.02E-9	125	170	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-11	125	165	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-9	125	169	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MTRRCSHCSN NGHNAHLPSS RRRWRGAALQ RAPNVGASAG DDEEERQHEL HRLFARQRVR 60 GLFAGGGRSR RLQGRGRRVR VRRPRTCFLL GEWSSRAQES TLCVPFTYQL IEHTERCERQ 120 DSCTPWTEEE HRMFLMGLQK LGKGDWRGIS RNFVVSRTPT QVANQAQKYF IRHTNSSRRK 180 RRSSLFDMVP EMPMDEAPIA AAMEQFPCQN NQDEATSSIH FPSLHVGLQK KTEFAKQLPS 240 LQSRQHGESG FTEPSLPPVD MEMNPSASFK AITASTVPAF YPASVPVMLT LWPPNIANLE 300 NTGTSREILR PTPLKGKEVI KADNVVGMSK LTIDEATAGS MEPTSLSLKL IESMDTRQSA 360 FHVSPRRTRP DLSKRNNSPI HAV

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MTRRCSHCSN NGHNAHLPSS RRRWRGAALQ RAPNVGASAG DDEEERQHEL HRLFARQRVR  60
GLFAGGGRSR RLQGRGRRVR VRRPRTCFLL GEWSSRAQES TLCVPFTYQL IEHTERCERQ  120
DSCTPWTEEE HRMFLMGLQK LGKGDWRGIS RNFVVSRTPT QVANQAQKYF IRHTNSSRRK  180
RRSSLFDMVP EMPMDEAPIA AAMEQFPCQN NQDEATSSIH FPSLHVGLQK KTEFAKQLPS  240
LQSRQHGESG FTEPSLPPVD MEMNPSASFK AITASTVPAF YPASVPVMLT LWPPNIANLE  300
NTGTSREILR PTPLKGKEVI KADNVVGMSK LTIDEATAGS MEPTSLSLKL IESMDTRQSA  360
FHVSPRRTRP DLSKRNNSPI HAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	83	RRLQGRGRRVRVRRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149973.1	1e-128	myb-related transcription activator
TrEMBL	B4FMD2	1e-126	B4FMD2_MAIZE; MYB-RELATED transcription factor
STRING	Sb03g003270.1	1e-124	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91