PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01044.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 429aa MW: 46091.4 Da PI: 6.8314

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01044.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	180	231	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P + + + + a+i+ A++++k+L+ Zmw_sc01044.1.g00110.1.am.mk 180 QRITHIAVERNRRRQMNEYLAVLRSLMPDS---YVHRGDQASIVSGAIDCVKELE 231 799*************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.93E-13	178	235	No hit	No description
SuperFamily	SSF47459	4.45E-17	178	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.424	179	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	180	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-13	181	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-10	185	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MNCVDSCKLV KISWSIRLRG EGDLAIHATG RLKHFLAAAA APTACPSTKL ALSFTSDSAI 60 CMPDSTAAQL TRARALSYAM LYTSTIDMTL QEALCAPSSD VLIYDTFNAA ACAPSATGSF 120 LVVGNGATEA MALPVPMEVP VAAPTPAQEA EGETRAVHQG RRKRRRRERS VKNHEDAENQ 180 RITHIAVERN RRRQMNEYLA VLRSLMPDSY VHRGDQASIV SGAIDCVKEL EQQLQSLEAQ 240 KRALLAAQHQ QKRNSMAVER DTAQMPMSNS PANGAAGEKG EEEEEAAPAS PPPFSRFFRY 300 PQYVWLHARP REDGAEEASR ASGVADVEVS VVVDAHASVR VMAPRRPGQL HKMVAGLQAL 360 GLAVLHLNVT AADAVVLYTL SLKVEEGCAL TAADEIAAAV HHVMCIIEAE ATTQQRVLAA 420 GVGQTPGLS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MNCVDSCKLV KISWSIRLRG EGDLAIHATG RLKHFLAAAA APTACPSTKL ALSFTSDSAI  60
CMPDSTAAQL TRARALSYAM LYTSTIDMTL QEALCAPSSD VLIYDTFNAA ACAPSATGSF  120
LVVGNGATEA MALPVPMEVP VAAPTPAQEA EGETRAVHQG RRKRRRRERS VKNHEDAENQ  180
RITHIAVERN RRRQMNEYLA VLRSLMPDSY VHRGDQASIV SGAIDCVKEL EQQLQSLEAQ  240
KRALLAAQHQ QKRNSMAVER DTAQMPMSNS PANGAAGEKG EEEEEAAPAS PPPFSRFFRY  300
PQYVWLHARP REDGAEEASR ASGVADVEVS VVVDAHASVR VMAPRRPGQL HKMVAGLQAL  360
GLAVLHLNVT AADAVVLYTL SLKVEEGCAL TAADEIAAAV HHVMCIIEAE ATTQQRVLAA  420
GVGQTPGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	166	RAVHQGRRKRRRR
2	160	166	RRKRRRR
3	160	167	RRKRRRRE
4	161	165	RKRRR
5	161	168	RKRRRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319605.1	1e-115	transcription factor bHLH96-like
TrEMBL	A0A1B6PMY0	1e-113	A0A1B6PMY0_SORBI; Uncharacterized protein
STRING	Si010485m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78