PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01043.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 542aa MW: 58257.5 Da PI: 8.5407

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01043.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.6	9.7e-18	394	482	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkv+ p+ +++ l +p +f e ++ ++ + ++l+ +sg sW+v l + +s++ v+t+GWkeF++++ L g f++ Zmw_sc01043.1.g00070.1.am.mk 394 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 468 8999988887765..9****954465544..48***********..************************* PP EEE-SSSEE..EEEEE CS B3 82 Fkldgrsefelvvkvf 97 F++dg sef v vf Zmw_sc01043.1.g00070.1.am.mk 469 FTYDGCSEF--SVAVF 482 *986776..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.6E-21	392	483	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-19	393	483	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-16	394	482	No hit	No description
Pfam	PF02362	7.6E-15	394	480	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-13	394	488	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.957	407	485	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MTRTPPRITV ASGASEAGQE ASPEPNEAGC RGQAWGRTVG GRVLSQGGKR EAPTRHTRSC 60 LYSPSPPTLP CTSAVHPPAL PRCGPSLRLC PRLPPPPRLP AEPLPHLVLG PPSRCRLPRR 120 LHNQLRCCRK VAFWAPDGRA RRAVEGGGSP ALTSDEAVAA VDQFEAKVAA AARGWGRGVR 180 EVRQCRAQIE EEGRGDGRGG GADPLGADES VSRAVGWRWE VEVRSRARKG CGAGIATARG 240 TAVCPCSPTH PAKEVERQSV SHYRGSEMVA CPALPAGASE SVGGDSEVSQ NSEFRCSVTR 300 GEDALVAVTR RPEIRAPAGV RQPEIETEGH TKQQGSSSAA AATAVMRNGM GKEKEKQVEK 360 GRDRRKEKQS GKEQRKEIAR EVQDDVPVAA GEQFFKVFFP EQSGEGLKIP SPFHEYVEEA 420 PNRVVSLRGP SGHSWRVVLT TGSQGLVFTQ GWKEFARDHS LIPGHFLLFT YDGCSEFSVA 480 VFTPLGVEDK AALKVQPCKE LLVKQEEEEG TVDVAADGTL EASDTPFLEG NGATTGKRAR 540 YW

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MTRTPPRITV ASGASEAGQE ASPEPNEAGC RGQAWGRTVG GRVLSQGGKR EAPTRHTRSC  60
LYSPSPPTLP CTSAVHPPAL PRCGPSLRLC PRLPPPPRLP AEPLPHLVLG PPSRCRLPRR  120
LHNQLRCCRK VAFWAPDGRA RRAVEGGGSP ALTSDEAVAA VDQFEAKVAA AARGWGRGVR  180
EVRQCRAQIE EEGRGDGRGG GADPLGADES VSRAVGWRWE VEVRSRARKG CGAGIATARG  240
TAVCPCSPTH PAKEVERQSV SHYRGSEMVA CPALPAGASE SVGGDSEVSQ NSEFRCSVTR  300
GEDALVAVTR RPEIRAPAGV RQPEIETEGH TKQQGSSSAA AATAVMRNGM GKEKEKQVEK  360
GRDRRKEKQS GKEQRKEIAR EVQDDVPVAA GEQFFKVFFP EQSGEGLKIP SPFHEYVEEA  420
PNRVVSLRGP SGHSWRVVLT TGSQGLVFTQ GWKEFARDHS LIPGHFLLFT YDGCSEFSVA  480
VFTPLGVEDK AALKVQPCKE LLVKQEEEEG TVDVAADGTL EASDTPFLEG NGATTGKRAR  540
YW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4461	37	66