PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01035.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 399aa MW: 40559.7 Da PI: 9.2219

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01035.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133	2.8e-41	62	236	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss Zmw_sc01035.1.g00180.1.am.mk 62 PPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 142 689******************************************************************999877777777 PP TCP 82 asnsssg....................................kaaksaakskksqksaasalnlakesrakarar..are 124 +s+ s++ ++++s + + +s + l+++ + +a a a +r+ Zmw_sc01035.1.g00180.1.am.mk 143 GSSFSAPahlraalpspssavrfgradawdrvvglgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdiSRK 223 775555577788888889999999999999999999999999655555558888888888889999866655555546666 PP TCP 125 .rtrekmriknkl 136 r++++ ++++++ Zmw_sc01035.1.g00180.1.am.mk 224 rRWEQEIQQQQQQ 236 5566555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.4E-43	67	237	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.861	68	122	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDVAGDGGGG RRPNFPLQLL EKKEEQPCSS SAAVGASAGG GNGNGSGAPC GPGGEVQVRK 60 TPPKRSSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW LLQQAEPAVI 120 AATGTGTIPA NFTSLNISLR SSGSSFSAPA HLRAALPSPS SAVRFGRADA WDRVVGLGFP 180 SEGPASSSSS PSPLLLNFHS GSVGLDVQPS PSAAAAAADI SRKRRWEQEI QQQQQQQQYQ 240 QQMAGYTQSQ MPGTVWMVPS NNTQGGTPSS GGGSGGNGGG SGESIWTFPQ MSSAAAAAAM 300 YRGNVPSGLH FMNFPAAPMA LLPGQQLGLG PVGGSGGGGD GGGGEGHMGI LTALNAYRTQ 360 TATDSAAAQQ GDGGGRGSGQ QQHGGGRGER HESMSTSDS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDVAGDGGGG RRPNFPLQLL EKKEEQPCSS SAAVGASAGG GNGNGSGAPC GPGGEVQVRK  60
TPPKRSSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW LLQQAEPAVI  120
AATGTGTIPA NFTSLNISLR SSGSSFSAPA HLRAALPSPS SAVRFGRADA WDRVVGLGFP  180
SEGPASSSSS PSPLLLNFHS GSVGLDVQPS PSAAAAAADI SRKRRWEQEI QQQQQQQQYQ  240
QQMAGYTQSQ MPGTVWMVPS NNTQGGTPSS GGGSGGNGGG SGESIWTFPQ MSSAAAAAAM  300
YRGNVPSGLH FMNFPAAPMA LLPGQQLGLG PVGGSGGGGD GGGGEGHMGI LTALNAYRTQ  360
TATDSAAAQQ GDGGGRGSGQ QQHGGGRGER HESMSTSDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825808.1	1e-161	transcription factor TCP14-like
Swissprot	Q93Z00	6e-55	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A2S3GSV0	1e-160	A0A2S3GSV0_9POAL; Uncharacterized protein
STRING	Pavir.J14065.1.p	1e-160	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]