PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01033.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 395aa MW: 42559.1 Da PI: 9.6339

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01033.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.7	1.3e-28	324	381	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY eC++NhAa++Gg++vDGC+Ef+++ geegt alkCaACgCHR+FHRr +++e Zmw_sc01033.1.g00010.1.am.mk 324 CSVRYGECRRNHAATTGGYSVDGCREFIAE-GEEGTGGALKCAACGCHRSFHRRVQVYE 381 789************************8.999******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-24	306	385	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.0E-27	326	378	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-20	327	376	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.361	328	377	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
AWLGALVRDS GTAMATHACY SYSSMDMHES SKASHRKKLE KKKARVKSNA TRDPGGRDGR 60 SATPCGLGNA QGPDSMPAPT QAGRPQGATA LLRAPCIMQA CRGTPNLIQS SCREEGRKEG 120 RTHAVEGRWR VPSAHLVRGL NAPALPAPSL IDLKALSPLI TAAPLRSRNG MELNGPPEAD 180 PGDGIRRRRD GETSAPPTDK RARTYCCRPA GSVRSIDRNS RGAVGVRSGT VRSILSDRME 240 VIGARYERPA VASPTRRISP VSHDDVGGGG GDSYLPVVHS KQGLHSPCAE TRLWLAGWEE 300 EGRLTMKRLL ILRRCEPIVR FTCCSVRYGE CRRNHAATTG GYSVDGCREF IAEGEEGTGG 360 ALKCAACGCH RSFHRRVQVY EVSWDYAASD SSSTE

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

AWLGALVRDS GTAMATHACY SYSSMDMHES SKASHRKKLE KKKARVKSNA TRDPGGRDGR  60
SATPCGLGNA QGPDSMPAPT QAGRPQGATA LLRAPCIMQA CRGTPNLIQS SCREEGRKEG  120
RTHAVEGRWR VPSAHLVRGL NAPALPAPSL IDLKALSPLI TAAPLRSRNG MELNGPPEAD  180
PGDGIRRRRD GETSAPPTDK RARTYCCRPA GSVRSIDRNS RGAVGVRSGT VRSILSDRME  240
VIGARYERPA VASPTRRISP VSHDDVGGGG GDSYLPVVHS KQGLHSPCAE TRLWLAGWEE  300
EGRLTMKRLL ILRRCEPIVR FTCCSVRYGE CRRNHAATTG GYSVDGCREF IAEGEEGTGG  360
ALKCAACGCH RSFHRRVQVY EVSWDYAASD SSSTE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120