PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01023.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 177aa    MW: 18847.9 Da    PI: 8.1986
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01023.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.72.2e-5530122193
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedy 79 
                                     vreqdrflPian+sri+kk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y
  Zmw_sc01023.1.g00180.1.sm.mkhc  30 VREQDRFLPIANISRIVKKAVPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEY 108
                                     69***************************************************************************** PP

                           NF-YB  80 veplkvylkkyrel 93 
                                     +eplkvyl+kyr+ 
  Zmw_sc01023.1.g00180.1.sm.mkhc 109 IEPLKVYLQKYRQG 122
                                     ************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5228131IPR009072Histone-fold
SuperFamilySSF471133.26E-3833125IPR009072Histone-fold
PfamPF008083.8E-2736100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.7E-236482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.7E-2383101No hitNo description
PRINTSPR006158.7E-23102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MADWPTSPGG GGGSHESGSP RGGGGGGSGV REQDRFLPIA NISRIVKKAV PANGKIAKDA  60
KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEEYIE PLKVYLQKYR  120
QGDSKLTAKA GDGSVKKDTL GHGGATSSTP QGMGQQGTYN QGMSYMQPQY HNGDISN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4829121193NF-YB
4awl_B2e-4829121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4829121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961814.16e-99nuclear transcription factor Y subunit B
RefseqXP_004961815.16e-99nuclear transcription factor Y subunit B
RefseqXP_012700237.16e-99nuclear transcription factor Y subunit B
SwissprotP252094e-97NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLK3ZA331e-97K3ZA33_SETIT; Uncharacterized protein
STRINGSi023400m2e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]