PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01022.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 264aa MW: 29340.2 Da PI: 9.776

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01022.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	97.7	7.1e-31	127	234	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k+ tpsdv+k++rlv+pk++ae+h g +++ l +ed +g++W+++++y+ +s++yvltkGW++Fv+++g Zmw_sc01022.1.g00090.1.am.mk 127 FEKTVTPSDVGKLNRLVVPKHHAEKHfplkrapdAGTGGKGVLLNFEDGEGKVWRFRYSYWTSSQSYVLTKGWSRFVREKG 207 99***********************999988844445899*********************************** PP --TT-EEEEEE-SS.SEE..EEEEE-S CS B3 74 LkegDfvvFkldgr.sefelvvkvfrk 99 +++gD+v+F+++ +e++l++++++k Zmw_sc01022.1.g00090.1.am.mk 208 IRAGDTVTFYRSAYgQEKQLLIGFRKK 234 ********99776888889988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-38	123	240	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.75E-29	126	219	No hit	No description
SuperFamily	SSF101936	2.09E-30	126	223	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.269	127	235	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-28	127	234	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-25	127	235	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MHRAVGIIVV LEQVDRPRAP HWHWCSTTTT SPANQRPTSS VFGSCATVCA DSAWRPGLHP 60 AVLNFPEPEE CASDGELAFL HAHSKAEVVD MLRKHTYADE LRQGLRRGSG VGARARPTPA 120 WAREQLFEKT VTPSDVGKLN RLVVPKHHAE KHFPLKRAPD AGTGGKGVLL NFEDGEGKVW 180 RFRYSYWTSS QSYVLTKGWS RFVREKGIRA GDTVTFYRSA YGQEKQLLIG FRKKQETQDE 240 AAAAAIAVES ETRVVKLFGA DIAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	3e-52	124	243	11	126	DNA-binding protein RAV1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818627.1	7e-96	AP2/ERF and B3 domain-containing protein Os01g0141000-like
Swissprot	Q9AWS0	2e-85	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	A0A1E5VZN1	3e-99	A0A1E5VZN1_9POAL; Putative AP2/ERF and B3 domain-containing protein
STRING	Pavir.Ea00485.1.p	1e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]