PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01022.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 21723.6 Da PI: 4.843 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.7e-11 | 118 | 157 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++RR+riN+++ L+el+P+ +K++ +++Le+AveY+k L Zmw_sc01022.1.g00030.1.sm.mk 118 KKRRQRINERLRILQELIPNG-----TKVDISTMLEEAVEYVKFL 157 9******************97.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-13 | 105 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-14 | 106 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.123 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-9 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.83E-10 | 117 | 162 | No hit | No description |
Pfam | PF00010 | 2.2E-8 | 118 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEIECATICE ESEMIAHLQS VFWGSSDLDV DPNLPSSNIS SLIDNESFCS GLVLNITQNV 60 AFERKHDNFS SENGATLGSK RKIQTDELMI SGEEDCAVPA AMRARKKSEK DSQSRYAKKR 120 RQRINERLRI LQELIPNGTK VDISTMLEEA VEYVKFLHLQ IKLLSSDELW MYAPLAYRGI 180 NIGGHLDALS AQE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 120 | RKKSEKDSQSRYAKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809609.1 | 4e-62 | transcription factor bHLH84-like | ||||
TrEMBL | A0A2S3HE59 | 8e-61 | A0A2S3HE59_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EHD8 | 8e-61 | A0A2T7EHD8_9POAL; Uncharacterized protein | ||||
STRING | ORGLA12G0196200.1 | 3e-58 | (Oryza glaberrima) | ||||
STRING | OBART12G13380.1 | 3e-58 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14508 | 21 | 23 |