PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01019.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 469aa MW: 49546.5 Da PI: 10.1281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01019.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.3	8.7e-28	54	124	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++ Zmw_sc01019.1.g00140.1.am.mk 54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPLQFPPQHAQ 124 78*************************************************************99999443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-25	55	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.596	55	113	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	0.0013	260	278	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MISGNHTNEE LAGCRKAEQP AVVDAGAAKS AAASSRPWPP STESRIVRVS RVFGGKDRHS 60 KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIDATQHEI DKLPPLQFPP 120 QHAQDLVAHL QPTSMLTPFA SAAAEATAAS SVLDGDKGGI KGLMGLNNSV SLGNGAMPLS 180 HGLHFAGESW TNGGSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFTM 240 KEASDQFPSR IVRVSRVFGG KDRHSKVRTV KGLRDRRCGC PCRLRSSSTT SRTGWGSVSL 300 ASTRSTSCRR CSSRRKHAQD LVAHLQPTSM LTPFASAAAA ATAASSVLDG DKGGIKGLMG 360 LNNSVGLGNG AMSLAHGLYF TGESWTNGGS VHDQVSHGNS PQPTVAHHSP FSSLLSLSPG 420 PQLVFYSPEG GGFAVKEASD QFPVDNLEHW QGQLSLNSAR SFLHSGSQG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MISGNHTNEE LAGCRKAEQP AVVDAGAAKS AAASSRPWPP STESRIVRVS RVFGGKDRHS  60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIDATQHEI DKLPPLQFPP  120
QHAQDLVAHL QPTSMLTPFA SAAAEATAAS SVLDGDKGGI KGLMGLNNSV SLGNGAMPLS  180
HGLHFAGESW TNGGSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFTM  240
KEASDQFPSR IVRVSRVFGG KDRHSKVRTV KGLRDRRCGC PCRLRSSSTT SRTGWGSVSL  300
ASTRSTSCRR CSSRRKHAQD LVAHLQPTSM LTPFASAAAA ATAASSVLDG DKGGIKGLMG  360
LNNSVGLGNG AMSLAHGLYF TGESWTNGGS VHDQVSHGNS PQPTVAHHSP FSSLLSLSPG  420
PQLVFYSPEG GGFAVKEASD QFPVDNLEHW QGQLSLNSAR SFLHSGSQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	60	114	1	55	Putative transcription factor PCF6
5zkt_B	1e-19	60	114	1	55	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961521.1	1e-118	transcription factor TCP13 isoform X1
Refseq	XP_004961522.1	1e-118	transcription factor TCP13 isoform X1
Refseq	XP_012700333.1	1e-118	transcription factor TCP13 isoform X1
TrEMBL	A0A3L6SYL4	1e-119	A0A3L6SYL4_PANMI; Transcription factor TCP13-like isoform X1
STRING	Si022830m	1e-118	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84