PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01017.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 413aa MW: 41481 Da PI: 9.2175

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01017.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	199.5	1e-61	206	366	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelks 80 +sg++sC dCGnqakk+Cah+RCRtCC+srgfdC thvkstWvpa +rrerqq + aa ++ + + a+kr+r + Zmw_sc01017.1.g00010.1.sm.mkhc 206 GSGGTSCYDCGNQAKKGCAHNRCRTCCNSRGFDCDTHVKSTWVPAVRRRERQQLAGAAGASPPS--PAGAAKRPRLACQ 282 57889********************************************9999998777766..6778899999999 PP DUF702 81 kkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149 +++ a s+t++s+a++++++etss lP++v+ +a+frcv+v+svddg+ e+aYq+av+i+Gh+f+G+Lyd Zmw_sc01017.1.g00010.1.sm.mkhc 283 TNTGANSRTSTSNATTPRSFETSSshqdasfresLPRHVRGPALFRCVQVTSVDDGQREVAYQAAVTINGHLFRGLLYD 361 99999*************9999************************************************* PP DUF702 150 qGlee 154 G+e+ Zmw_sc01017.1.g00010.1.sm.mkhc 362 LGAED 366 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-55	209	365	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-24	211	253	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.1E-21	317	363	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MILLRNLLLT RRSSIGRPPS CDPVLCSAAA TPPRASVASS GRRFASAPDS TAVADWLPSP 60 VGSGRGGDLS LGFNAGAPAA GASSLATGFL GSAASRHQAA AAALGYGAVN AAGDVGMVLV 120 GPAGGSSFHH QRAATAAASP DDPMFPLVAV AQRALDANAA KPAAPGPAIQ FWQAPPPAAA 180 ADGSPGNKPP AVTDYGRGRA DSGGSGSGGT SCYDCGNQAK KGCAHNRCRT CCNSRGFDCD 240 THVKSTWVPA VRRRERQQLA GAAGASPPSP AGAAKRPRLA CQTNTGANSR TSTSNATTPR 300 SFETSSSHQD ASFRESLPRH VRGPALFRCV QVTSVDDGQR EVAYQAAVTI NGHLFRGLLY 360 DLGAEDARAT SAAAQLGSSD LHLGSASANA APDLYSGGSG PLILGGLGYG NTP

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MILLRNLLLT RRSSIGRPPS CDPVLCSAAA TPPRASVASS GRRFASAPDS TAVADWLPSP  60
VGSGRGGDLS LGFNAGAPAA GASSLATGFL GSAASRHQAA AAALGYGAVN AAGDVGMVLV  120
GPAGGSSFHH QRAATAAASP DDPMFPLVAV AQRALDANAA KPAAPGPAIQ FWQAPPPAAA  180
ADGSPGNKPP AVTDYGRGRA DSGGSGSGGT SCYDCGNQAK KGCAHNRCRT CCNSRGFDCD  240
THVKSTWVPA VRRRERQQLA GAAGASPPSP AGAAKRPRLA CQTNTGANSR TSTSNATTPR  300
SFETSSSHQD ASFRESLPRH VRGPALFRCV QVTSVDDGQR EVAYQAAVTI NGHLFRGLLY  360
DLGAEDARAT SAAAQLGSSD LHLGSASANA APDLYSGGSG PLILGGLGYG NTP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806754.1	1e-130	protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A3L6SZ11	1e-120	A0A3L6SZ11_PANMI; Protein LATERAL ROOT PRIMORDIUM 1-like
STRING	Pavir.Cb01442.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79