PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01013.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 294aa    MW: 30869.5 Da    PI: 7.7805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01013.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13132176347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  Zmw_sc01013.1.g00250.1.am.mkhc 132 PWSEEEHRQFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 176
                                     8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.031125181IPR017930Myb domain
SuperFamilySSF466895.38E-17126182IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-17128180IPR006447Myb domain, plants
SMARTSM007171.0E-9129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-10129172IPR009057Homeodomain-like
CDDcd001672.83E-9132177No hitNo description
PfamPF002491.8E-10132175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSL GHREVMLCEA GSNGGGGGSG LRLFGVQVHV GAGAGGGSAS  60
SMMKKSYSMD CLQLAAAAAA VAPGCSLVSP SSLSSSSMLL SIDEGLERAA TNGYLSDGPH  120
GRVMQERKKG VPWSEEEHRQ FLVGLEKLGK GDWRGISRSY VTTRTPTQVA SHAQKFFLRQ  180
SSMGKKNRRS SLFDMVPICE NGERVSDQPS SESTSTSLSL SVPPRDGSSD RPPALDLNCT  240
EEEDSRAELS PAPGARTQAA PLHPASSHSH GHGLHCSLLE LDLGMSLSTP SVGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569313.11e-115transcription factor MYBS3
TrEMBLA0A0A9K2J01e-130A0A0A9K2J0_ARUDO; Uncharacterized protein
STRINGPavir.Ea02123.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066