PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01010.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1495aa MW: 162962 Da PI: 5.9471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01010.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.2e-09	669	711	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Zmw_sc01010.1.g00260.1.sm.mkhc 669 PWTQEEKEIFMETLAKFGKD-FSKISSFIT-HKTTADCVEFYYKH 711 8***************99.****9.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.21E-15	653	714	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-7	660	714	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.886	665	716	IPR017884	SANT domain
SMART	SM00717	1.8E-8	666	714	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-7	668	711	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.666	873	924	IPR017884	SANT domain
SMART	SM00717	1.3E-6	874	922	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-4	877	919	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.67E-9	877	924	IPR009057	Homeodomain-like
CDD	cd00167	5.75E-5	878	916	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1495 aa Download sequence Send to blast
MPLGYTPSRS DRYWMDDEGG GYKGFSRYGG GRRDGRDMRG SYRRSPFRSY GNDFSRNHQE 60 QPPPPPPRRS PLRSVALPIY DPPGNRVDRG DRDSLPRVTP WRRRENRSEA AGAAGAGHVS 120 AGQSALLAAS GNEVSAHPPA VTSPHGAEEE APRKKARLGW GQGLAKYEKQ KVQGPTDPSE 180 DVALGSPAES SFSCTCSCAM HIDDCCANIS TSAMCIPSCG AATSTSTMRI PGCCTITSIY 240 GMCISGFCSR TCTSRMCISS SSAITSICGT TCTCTSTMCI CDTTCTCTST MCISATEVKS 300 CDLTANTVLN STQDTPGADD QACNNEFPIK IDQLGDDCID SLATLLAKFL EHDSCPGDSK 360 DPSSTSKLLL LKESISKEIE KIELEIDSLE GELKSVYTVA PEDSPTGVTY TENISPPSGT 420 SKVPGCDKSH VKEPRELSPF PKIPIVQDAN AKDAESMDIE TAPVHNAKTA SEESAACPEN 480 QAQAAADVGP VNVSGVAEPQ IDVDNERLEV SSWHIDTDSV KADGGVDLRG RQCLYPNHDL 540 LSSVTSSNHD IAKEANESVF KCLSGDTPRL DLLDTSHVSI ERKNVSFIKE KLMLRKSRLS 600 FKEQALTFKF RALRYLWKED MRVKRRRNYF KMPALIINEK EKECSRFLSK NGLIEDPVAV 660 EKERVMINPW TQEEKEIFME TLAKFGKDFS KISSFITHKT TADCVEFYYK HHKSDSFREV 720 KKLLDQHQQQ QPTSTFLGTK SGKKWNREPN AASLDILGIA SAVAAQGLEY EKRVEKFSAK 780 SLIRNVSNVS FMARKSSREC FDNTSLHERE SVAADVLAGI CGTLSPEGMS SCITSSADPG 840 QKINITRMEN ALTLEIGKNV DDEDTLSDIE CEVDPVDWND DEKQIFIEAM NNYGKDFARI 900 SSCVKSKSYE QCKVFFSKAR KSLGLDLIHQ GAADINMPTS DTNGGRSDTD EACAAEMDSV 960 ICSTQSFAKT EMDVCPTERA VQGPSSCVIS KQTEGDGSND CNVLDVNTEC ENKADKTCDD 1020 QKRFNEVAHQ SQCGPIDINC PETTEKLEGT ADTVDQMNMH NSSAVISSKD QPEARMDGCS 1080 HPALDNALVK AGTADPSASI VAESGIKENI HHFSNPPSTS SYQHSMPRDK PPSKPKPQVT 1140 PLTPKDLMPV QFSSVLPDPT SIRFEGIASI TTPNFEDNGN RACNALEAKD MNKYPAFKEQ 1200 SQAGQHDLLF HNIDGYKKHL ATEASIFSER NTCGTVSTSQ SDRFTVTKFQ NGRSSSLGGL 1260 PNTKGIHWDR EHNEVSDGSL RHCSHNTSSD SNEQIKRLGD VKLFGQILSH QSSQNSGSSC 1320 NGSINKPSLP NVDTSSMRLL NSPRDHVSCS PRPVATGHLG LDDLSVRTYG HLDGSTTQPE 1380 PLPTMTKCQT SLSGVPFYSA KNGTRGMFSG YQQPLMQAHQ SDPKRLERYS DPHKRNGMEF 1440 ISGFQQQPGK VSLFGGAGVL VSGVSDPVAA LKAQYGPGSK ITSCDVDPWK DIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1495 aa Download sequence Send to blast

MPLGYTPSRS DRYWMDDEGG GYKGFSRYGG GRRDGRDMRG SYRRSPFRSY GNDFSRNHQE  60
QPPPPPPRRS PLRSVALPIY DPPGNRVDRG DRDSLPRVTP WRRRENRSEA AGAAGAGHVS  120
AGQSALLAAS GNEVSAHPPA VTSPHGAEEE APRKKARLGW GQGLAKYEKQ KVQGPTDPSE  180
DVALGSPAES SFSCTCSCAM HIDDCCANIS TSAMCIPSCG AATSTSTMRI PGCCTITSIY  240
GMCISGFCSR TCTSRMCISS SSAITSICGT TCTCTSTMCI CDTTCTCTST MCISATEVKS  300
CDLTANTVLN STQDTPGADD QACNNEFPIK IDQLGDDCID SLATLLAKFL EHDSCPGDSK  360
DPSSTSKLLL LKESISKEIE KIELEIDSLE GELKSVYTVA PEDSPTGVTY TENISPPSGT  420
SKVPGCDKSH VKEPRELSPF PKIPIVQDAN AKDAESMDIE TAPVHNAKTA SEESAACPEN  480
QAQAAADVGP VNVSGVAEPQ IDVDNERLEV SSWHIDTDSV KADGGVDLRG RQCLYPNHDL  540
LSSVTSSNHD IAKEANESVF KCLSGDTPRL DLLDTSHVSI ERKNVSFIKE KLMLRKSRLS  600
FKEQALTFKF RALRYLWKED MRVKRRRNYF KMPALIINEK EKECSRFLSK NGLIEDPVAV  660
EKERVMINPW TQEEKEIFME TLAKFGKDFS KISSFITHKT TADCVEFYYK HHKSDSFREV  720
KKLLDQHQQQ QPTSTFLGTK SGKKWNREPN AASLDILGIA SAVAAQGLEY EKRVEKFSAK  780
SLIRNVSNVS FMARKSSREC FDNTSLHERE SVAADVLAGI CGTLSPEGMS SCITSSADPG  840
QKINITRMEN ALTLEIGKNV DDEDTLSDIE CEVDPVDWND DEKQIFIEAM NNYGKDFARI  900
SSCVKSKSYE QCKVFFSKAR KSLGLDLIHQ GAADINMPTS DTNGGRSDTD EACAAEMDSV  960
ICSTQSFAKT EMDVCPTERA VQGPSSCVIS KQTEGDGSND CNVLDVNTEC ENKADKTCDD  1020
QKRFNEVAHQ SQCGPIDINC PETTEKLEGT ADTVDQMNMH NSSAVISSKD QPEARMDGCS  1080
HPALDNALVK AGTADPSASI VAESGIKENI HHFSNPPSTS SYQHSMPRDK PPSKPKPQVT  1140
PLTPKDLMPV QFSSVLPDPT SIRFEGIASI TTPNFEDNGN RACNALEAKD MNKYPAFKEQ  1200
SQAGQHDLLF HNIDGYKKHL ATEASIFSER NTCGTVSTSQ SDRFTVTKFQ NGRSSSLGGL  1260
PNTKGIHWDR EHNEVSDGSL RHCSHNTSSD SNEQIKRLGD VKLFGQILSH QSSQNSGSSC  1320
NGSINKPSLP NVDTSSMRLL NSPRDHVSCS PRPVATGHLG LDDLSVRTYG HLDGSTTQPE  1380
PLPTMTKCQT SLSGVPFYSA KNGTRGMFSG YQQPLMQAHQ SDPKRLERYS DPHKRNGMEF  1440
ISGFQQQPGK VSLFGGAGVL VSGVSDPVAA LKAQYGPGSK ITSCDVDPWK DIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-14	632	718	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-14	632	718	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960366.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_004960367.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_012700232.1	0.0	uncharacterized protein LOC101781442 isoform X1
TrEMBL	K3Z335	0.0	K3Z335_SETIT; Uncharacterized protein
STRING	Si020953m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49