PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01008.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 700aa    MW: 75642.2 Da    PI: 8.0487
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01008.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24157258199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+++
  Zmw_sc01008.1.g00220.1.sm.mkhc 157 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 233
                                     89****************************996555555..8999********************************** PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   +++ +el+v+++r+
  Zmw_sc01008.1.g00220.1.sm.mkhc 234 KLVAGDSIVFL--RTEHGELCVGIRRA 258
                                     ***********..55999*******97 PP
2Auxin_resp87.62.4e-29313381168
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                                     aa+ a+  ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ 
  Zmw_sc01008.1.g00220.1.sm.mkhc 313 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQV 381
                                     67889999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-36148260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-29152260IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-22155257No hitNo description
SMARTSM010191.9E-21157259IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929157259IPR003340B3 DNA binding domain
PfamPF023625.1E-22157258IPR003340B3 DNA binding domain
PfamPF065076.1E-24313381IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKEAAEERGL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAQGGGGGG GAADLAVAMP  60
PVRSRVYYFP QGHAEHAQGG GGGGGAADLA VAVGPRALPA LVLCCVAGVR FLADPETDEV  120
FAKIRLVPVA PGEADFRGEH DELGGDPAEA RDKLPSFAKT LTQSDANNGG GFSVPRYCAE  180
TILPKLDYRA DPPVQTVLAK DVHGEVWKFR HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS  240
IVFLRTEHGE LCVGIRRAKR VSFGGMECMS GWNAPGYGAF SAFMKEEENR LMKGAGGYTR  300
GRGKVKIADV VDAASLAARC QPFEVVYYPR ASTPEFVVKA ALVQNAMRIQ WCPGMRFKMA  360
FETEDSSRIS WFMGTIASVQ VTWDEPDLLQ NVKCVNPWLV ELVSSIPPIH LGPFSPPRKK  420
LRVPQHPDFP FDGQLLNPIF HGYPLGPSNS PLCCFPDNAP AGIQGARHAQ FGLSLTDHQL  480
NRLGPGLFQG GGFNRLDTIT PSSRISKGFV ISSSPVHESV SCLLTIGTPQ GTEKSDDRKK  540
PHIMLFGKPI LTEQQMNSRG SSETLSPNTT GNSSSNGSVA KAANVSDGSG SSICVGFTSQ  600
GHEASELGLE AGHCKLADMF RIEKAEIISQ LRYHDAAGAV KHAGDEPFSD FMKVVRRLTI  660
IEGSEGRLQK PLMECVVERT YDVCSIVKKT SFGSLRKDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-581040551392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]