PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01004.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 418aa    MW: 45641.2 Da    PI: 7.6972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01004.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17115166556
                                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++  +q+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc01004.1.g00110.1.am.mk 115 RRLRVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 166
                                   467889*********************************************9 PP
2HD-ZIP_I/II124.84e-40112202191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   e+krrl  +qv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L 
  Zmw_sc01004.1.g00110.1.am.mk 112 ERKRRLRVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALL 192
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   +++++L++e+
  Zmw_sc01004.1.g00110.1.am.mk 193 AQNKKLHAEV 202
                                   ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1888169IPR009057Homeodomain-like
SMARTSM003898.6E-17111172IPR001356Homeobox domain
PROSITE profilePS5007116.325112168IPR001356Homeobox domain
SuperFamilySSF466893.72E-18112170IPR009057Homeodomain-like
CDDcd000861.33E-15113169No hitNo description
PfamPF000465.0E-15115166IPR001356Homeobox domain
PRINTSPR000316.9E-6139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000316.9E-6148164IPR000047Helix-turn-helix motif
PfamPF021833.7E-10168202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKPMATNGTA PSFFPANFLL QMHQPLPHHH HHPQQQDHPH HHDHEQHLLA PPPPSLSPFL  60
HDFAGAMAPP PMYPPDAGVS NDLHAEPPQQ QDGDAASDEE EGSAAAGGCV GERKRRLRVD  120
QVRTLERSFE VANKLEPERK AQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYDALRRQ  180
LDAARAENDA LLAQNKKLHA EVGDRTIHVG FNVICRKRAC RDRCRPYEHW ASCRPPMHRS  240
LCTACTMISH SIYPTNRHLA IGGPTPFCVR VVMRIMALKG GGGGGGGGRQ EAASELINLN  300
VKETEASCSN RSENSSEINL DISRPAPAAE ESRMNNHRAA ALPFYASAVG GRSGGGGGSS  360
LDIDQLLQHN HASPKMELGH GGGADTAAVS FGSLLCGGAV VDEQPPFWPW AADGHNFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116ERKRRL
2160168RRARWKTKQ
3278288KGGGGGGGGGR
4349357GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151416.22e-83homeobox-leucine zipper protein HAT7
SwissprotA2Z7343e-55HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL53e-55HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A1E5V6C73e-87A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p2e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4666423
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]