PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01003.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 287aa MW: 32303.4 Da PI: 9.0351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01003.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36	2.4e-11	108	182	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske.gkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fYn ++ e GF +r ++s+++ k++fv ke g+++ ++ +++ r+gCk ++++++++d++w+v+ Zmw_sc01003.1.g00120.1.sm.mk 108 NFYNLHSWEKGFGIRCNSSETN-------KNQFVVMKElGYPNAST---------KESVRCGCKSRMMLRRTDDHRWYVHL 172 6999999999999999998887.......34555555425555554.........459********************* PP FAR1 81 leleHnHela 90 ++ +HnH+l+ Zmw_sc01003.1.g00120.1.sm.mk 173 FVDNHNHKLS 182 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-7	145	182	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEGDSRSAPA AWRRGAPLLP SSAPKHSRAA ASAGASGLVG GLEDDHVTAS LQTRQIRGGM 60 RGPSERKQLV GRSSALEQAL LDFKNKPDGC VVVPKEEMSF DSYDEAFNFY NLHSWEKGFG 120 IRCNSSETNK NQFVVMKELG YPNASTKESV RCGCKSRMML RRTDDHRWYV HLFVDNHNHK 180 LSESLGEKRH WPSHKHLDMY TTDIIRHLRN NNINLTKLYG VMTSIFGSDG NPPFTKRKLK 240 YLCGTLARDA ATDDIKKTVE LLMRLHDEDP ESSSCNEGCN RSRMGRD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91