PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01000.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 239aa    MW: 26689.8 Da    PI: 8.963
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01000.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY129.44.8e-40411871162
                         YABBY   1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee 79 
                                   +d++  se++Cyv+C+fCnt+la  v vP + l+ +vtv+CGhC +l  ++l+  + + ++  +          + l+  +
  Zmw_sc01000.1.g00270.1.am.mk  41 MDLVAPSEHLCYVRCTFCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLSYLSLRPPTVQPPSPTD----------DPLGPFQ 111
                                   578899***************9744778*******************99999988888777774..........3333333 PP

                         YABBY  80 enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                                    +++  + +++++         s  + e ++rvp v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknW
  Zmw_sc01000.1.g00270.1.am.mk 112 GHCN--DCRRNQPLPLG-----SPTSAEVSARVPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNW 185
                                   3333..33333333332.....3455678889999********************************************** PP

                         YABBY 161 ah 162
                                   a 
  Zmw_sc01000.1.g00270.1.am.mk 186 AK 187
                                   *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-4446188IPR006780YABBY protein
SuperFamilySSF470951.96E-8131189IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-5142189IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRLARAPRKD LGASERVDRC GWCWSRADIP AANHQPKQEG MDLVAPSEHL CYVRCTFCNT  60
VLALQVGVPC KRLMDTVTVK CGHCNNLSYL SLRPPTVQPP SPTDDPLGPF QGHCNDCRRN  120
QPLPLGSPTS AEVSARVPFV VKPPEKKHRL PSAYNRFMRE EIQRIKAAKP DIPHREAFSM  180
AAKNWAKCDP RCSTAVSTAT STSAPEPRVV SAPQMLLQER AKEQVVESFD IFKQMERSI
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307124.11e-122protein DROOPING LEAF isoform X1
SwissprotQ76EJ01e-111YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A3L6TQ501e-124A0A3L6TQ50_PANMI; Protein DROOPING LEAF isoform X1
STRINGPavir.Ia04690.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657