PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00998.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 158aa    MW: 17577.4 Da    PI: 6.5155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00998.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19655255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  +++GVr+++ +g+Wv+eIr+p     +  +r++lg++ tae+Aa+a+++a++ + g
  Zmw_sc00998.1.g00160.1.am.mk  6 RFRGVRQRH-WGSWVSEIRHP-----HlkTRIWLGTYATAEDAARAYDEAARLMSG 55
                                  69******9.**********8.....556**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.45E-29565No hitNo description
SuperFamilySSF541715.49E-20664IPR016177DNA-binding domain
PROSITE profilePS5103220.574663IPR001471AP2/ERF domain
PfamPF008471.7E-11653IPR001471AP2/ERF domain
SMARTSM003806.1E-36669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32664IPR001471AP2/ERF domain
PRINTSPR003674.4E-10718IPR001471AP2/ERF domain
PRINTSPR003674.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPKLQRFRGV RQRHWGSWVS EIRHPHLKTR IWLGTYATAE DAARAYDEAA RLMSGPAART  60
NFPATATGVL SPAMRAKLEK YCTESSTTPQ QDEAIANASG TAERGARQKG DDDAKENKDD  120
RDEGHIDEMI SELTYYGPFE IHQHPSTTTT TATTSPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14363263ATERF1
3gcc_A2e-14363263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680905.12e-63ethylene-responsive transcription factor ERF003
SwissprotQ94AW56e-41ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLK3ZCS35e-62K3ZCS3_SETIT; Uncharacterized protein
STRINGSi024352m8e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]